Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g1853 ATGGAGAGCAACGAAATACTAGAGGAGCTTCTCAACATCGAGGTTGAGATTCAAGATGTCCAAGATCAAATAAGAGCCTTGATTGAAAGGCAAGAGAGGTTGTACGAGAGAAAATCTGAGCTAAGTGCTATTCTGGAAGCGTGTAAAGAATCTGGAAACCAGGTTAATAATGTGGGTCCAAGCACTGTGGAAAATTGGAGTGGGCCATTTGAATGGGATTCTGAAGCAGATGATGTTAGGTTGAATATCTTTGGCATTTCGTCCTACCGTGCAAATCAAAGAGAGATAATTAATGCCATCATGAGTGGAAGAGATGTCCTGGTGATTATGGCTGCAGGTGGTGGCAAAAGCCTGTGCTACCAGCTTCCTGCTGTTCTTCGTGATGGAATTGCTCTAGTTGTCAGTCCTTTACTTTCCTTGATTCAAGATCAGGTGATGGGTTTGACTGCTTTGGCCATTCCAGCATATATTTTGACTTCAACAACAAGTAAGGATGATGAGAAGTTCATATACAAGGCTTTGGAGAAGGGTGAGGGGGAACTAAAAATATTGTATGTCACTCCCGAAAAGATATCAAAAAGCAAGAGGTTTATGTCAAAACTTGAAAAATGCCATCATGCTGGTCGTCTCTCTCTAATTTCAATTGACGAGGCACATTGCTGTAGTCAGTGGGGTCATGACTTTCGACCTGACTACAAGAACCTTGGTATTCTCAAGACACAGTTCCCTAATGTTCCCATGGTTGCTTTGACAGCAACTGCTACTCAGAGGGTCCAAAATGATCTAATAGAGATGTTGCATATTCCTAGATGTGTCAAATTTGTCAGCACGGTCAATAGGCCAAGTTTATTTTATATGGTGAAGGAAAAGTCATCTGTTGGGAAGGTAGTTATTGATGAAATTGCAGAATTCATTCAAGAATCTTATTCAAATAATGAATCTGGGATTGTTTATTGTTTCTCTAGGAAGGAATGTGAACAGGTTGCAAAGGAGTTGAGGGAGAGAGGAATTTCAGCTGATTATTATCATGCAGATATGGATGTAAATGCTCGGGAAAAAGTTCATATGCGGTGGAGCAATAACAAGCTGCAGGTCATAGTTGGTACAGTAGCTTTTGGTATGGGAATCAACAAACCAGATGTCAGGTTTGTCATCCATCACAGCTTGAGTAAATCAATGGAAACATACTACCAGGAAAGTGGTCGAGCTGGCCGAGATGGACTTCCTTCTGAATGCCTACTGTATTTTAGACCTGGTGATGTTCCCCGGCAGAGTTCAATGGTCTTCTATGAAAATTCAGGACTGCAGAATCTCTATGACATAGTACGATATTGTCAGTCCAAAAGAAAATGCCGACGAAATGCCTTTTTCCGGCATTTTGCAGAGCCACTACAAGAGTGCAATGGGATGTGCGACAGCTGTGCATTTTCAAGTGAGGTGAAGGAAGTGGATGTCTCTGGTCATGCAAAACTGATTATTTCATTGTTGCAAGATATGCAAGCTAATGATCAAAGGTCAACAATGCTGCAATTAGTTGATAAAATGAAAATAAAACAGAAGGGACTAGGGTCTGATTTGAAACGAGAGGAAATTGAGCAGCTCATCTTACACCTTTTACTGGAGCGTGTTTTGAAAGAAGAATTTCAGCATACAGCTTATGCCACAAATGCTTACATTGCTGCAGGGCCTCTGGCCAAGCAAATATTGCAAGGTAAGAAATCTGCGAAGATTGAGATTTATACTGAACAGAAAACTAAAGCTGGTATAAGATCAGCAAAACGTTGCCTTGGGTCCTCTGGTTTGGAGCGGAAGCTTGATGAGCTGAGAAAAGAACTGTCTTCCGCCCATGGAGGAATACTCCCACACTCTGTCTTAACTACTGAGCAGATAAACTTAATAAGTTCTCAAAAACCTAACTCACTGGAACAGGCAAGTTTAAAGTTATATTATTTGGAGATGGTAATTGGAAAATTGAAGACACAAAAGTATGGAAATAGAATACTTGAGCAAATTGAAAAGTATTCTGATTTCAGGCCAAGCGATAAGCAAGGAACTGATGGTAGAGCTGCGAAGAGGTCGAAGACCAAGAAAACTCTTGTTCTTATTGAGAGTAGTGAAGATGAAGCATAA 2130 0.4075 MESNEILEELLNIEVEIQDVQDQIRALIERQERLYERKSELSAILEACKESGNQVNNVGPSTVENWSGPFEWDSEADDVRLNIFGISSYRANQREIINAIMSGRDVLVIMAAGGGKSLCYQLPAVLRDGIALVVSPLLSLIQDQVMGLTALAIPAYILTSTTSKDDEKFIYKALEKGEGELKILYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPNVPMVALTATATQRVQNDLIEMLHIPRCVKFVSTVNRPSLFYMVKEKSSVGKVVIDEIAEFIQESYSNNESGIVYCFSRKECEQVAKELRERGISADYYHADMDVNAREKVHMRWSNNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAGRDGLPSECLLYFRPGDVPRQSSMVFYENSGLQNLYDIVRYCQSKRKCRRNAFFRHFAEPLQECNGMCDSCAFSSEVKEVDVSGHAKLIISLLQDMQANDQRSTMLQLVDKMKIKQKGLGSDLKREEIEQLILHLLLERVLKEEFQHTAYATNAYIAAGPLAKQILQGKKSAKIEIYTEQKTKAGIRSAKRCLGSSGLERKLDELRKELSSAHGGILPHSVLTTEQINLISSQKPNSLEQASLKLYYLEMVIGKLKTQKYGNRILEQIEKYSDFRPSDKQGTDGRAAKRSKTKKTLVLIESSEDEA* 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g1853 709 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 128 423 IPR027417 -
Apr7g1853 709 Coils Coil 3 37 - -
Apr7g1853 709 PANTHER DNA HELICASE RECQ FAMILY MEMBER 7 688 - -
Apr7g1853 709 CDD SF2_C_RecQ 280 416 - -
Apr7g1853 709 MobiDBLite consensus disorder prediction 677 696 - -
Apr7g1853 709 SMART ultradead3 85 288 IPR014001 -
Apr7g1853 709 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 82 505 IPR004589 GO:0004386|GO:0006310
Apr7g1853 709 Pfam RecQ zinc-binding 419 475 IPR032284 -
Apr7g1853 709 SMART RQC_2 484 581 IPR018982 GO:0006260|GO:0006281|GO:0043138
Apr7g1853 709 Gene3D - 480 580 IPR036388 -
Apr7g1853 709 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 97 272 IPR014001 -
Apr7g1853 709 Pfam DEAD/DEAH box helicase 91 259 IPR011545 GO:0003676|GO:0005524
Apr7g1853 709 Gene3D HRDC domain 598 676 IPR044876 -
Apr7g1853 709 SMART helicmild6 326 407 IPR001650 -
Apr7g1853 709 Pfam RQC domain 481 585 IPR018982 GO:0006260|GO:0006281|GO:0043138
Apr7g1853 709 Pfam Helicase conserved C-terminal domain 301 406 IPR001650 -
Apr7g1853 709 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 297 446 IPR001650 -
Apr7g1853 709 PANTHER ATP-DEPENDENT DNA HELICASE Q1 7 688 - -
Apr7g1853 709 Gene3D - 280 476 IPR027417 -
Apr7g1853 709 Gene3D - 46 279 IPR027417 -
Apr7g1853 709 CDD DEXHc_RecQ1 71 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g1853 Apr-Chr7 25821616 25832794 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g1853 84 421 Eukaryotic Initiation Factors Gene Family AT3G19760 18.519 5.58e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g1853 K10899 - gmx:100817635 1207.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g1853 7 25821616 25832794 Apr7g1853 7 25821616 25832794 ECH