Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g1848 ATGGGTTACGATTCGGATAGCCCCTCGCAGGATGGGAGGGATGAAGATGACGAGGAAGAATATGAGGAGTCTGGCAGGGGCAATCGTTTTCTTGGGTTCATGTTTGGAAATGTTGATAATTCTGGTGATCTCGATGTTGATTATCTTGATGAGGATGCAAAGGAGCATCTTTCTGCATTAGCTGACAAGCTGGGTCCATCACTGACAGATATAGATTTGTCAGGAAAATCACCACAAACACCACCTGATGCTGTTGAACAAGACTGTGATGAAAAAGCTGAGGATGCAGTTGATTATGAAGATATTGATGAAGAATATGATGGTCCAGAGACAGAAGCTGCCAATGAAGAGGACCATTTATTGCCAAAAAAGGAGTTTTTCTCCACTGAAGTTGCTGTTGAAGTTTTGGAGTCCAAAACTTCTGTCTTTGATGATGAAAATTATGATGAAGAATCTGAAAAGGAACAAGACATAGTGAATGATGATTCTAAAGGGGAGCAGGAAGAGAGTTTTGTAGATGCATCTAAAGAAGAGAGTGCTCTTGAACAAGAACTACAAGTTGGCTCACTGCAGACTGAAGAATTGGACAGTGATGTGCAAAAACTTGAGGAGGAAGGGTCTGAAGTTCAGAAAAGGTCCATGTCTATGCCATTGCCCGTATTATGTGTGGAAGATGGTATGACAATTTTACGCTTCTCTGAAATCTTTGGCATTCACGAACCTCTCAGAAAAGGAGAAAAGAGAGAGCATCGGCATCCCATTCCTAGAGATAGATACCAGTCTTTGGATTTAACTGATGATATCGTAGAAGAGGATGAAGAGGACTTCCTCAAGGGCTTCTCTCATAGTCTCTCACTTACTAAACATGTTTGTGTAGTCCATAATGATGTATCAGAAATTGATGATGTTGACTTGGAATTTCCAAAATTTGGATTTCTTCATGGGGATGCTTCAATGGCTGGGAAAGATGATCGACAACCAAAGGACTCTTGTCTTTGTGCTGAACCAATGAAAGGGGATTTGACAGAAGATATTTCTGGGAAAGACCATCCTTTTATGTGGGCCAATTTTTATCCCCTTGATCAGCGAGACTGGGAAGATGAAATCCTCTGGGGCAATTCTCCTGTTCAAAGTCGTAGTAATGTTGAAAGCTGTGAAATTTCTGGACCTGAGTTGGGAGCATCCGGTGGAAGTGAAATAGAAATTGAAAGTGGGATCCAGAATCTTCACATAGAGCCACAGGAGATGCTGGAGGAGAATGATCATATTGTCTTCAAATGCAGTTCCCCTGTCTCATTGGAGCCCTTTGGCTCAAGGCATTCTTCTGGAGCTAAAACCAATTCAATGTCCAGAAGTCTATTTCATCCCCAACTATTGAGGCTAGAATCCAGATTTGAAGTGGATGCTGCTAATCTTGTAGATGGAAAAGGGGCAGATATATCTGAGAAGCATACTCAAAATGGTCAAATAAAGCGATTTACCAAGGTTATATCACAAAACAGAGACATGATGGAGGGATCCTGGTTAGACAATATAATATGGGAGGATCTTGATCGGGCTACAGTGAAACAAAAGCTTATCTTTGATCTTCAGGATGATCAAATGCACTTTGAAGTTTTAGAGAGCAAGGATGGTACACATCTTCGCCTCCATGCTGGGGCTATGATTTTAACTCGTTCTTTAAAATCGAGTGGTGGAGACTCTTCTGAGCTACCGGGACATGGAAGTCAATATGGATGGCGATACGTTGCTAATGACAAACACTATTCTAACCGTAAAACTTCTCAGCAACTTAAATCAAATTCCAAAAAACGCTCAGCTCATGGTGTCAAAGTTTTTCACTCCCAACCTGCACTGAAGCTGCAGACGATGAAATTGAAGTTGAGCAATAAAGATATTGCAAATTTTCACCGGCCTAAAGCATTATGGTATCCCCATGACAATGAGGTGGCTGTCAAAGAGCAAGGGAAATTGCCAACACAAGGACCCATGAAAGTTATTATAAAGAGCTTGGGTGGCAAGGGGAGTAAACTGCATGTTGATGCTGAAGAAACTCTCTCTTCTGTTAAAGTAAAAGCTTCCAAAAAGCTAGATTTTAAGGCATCAGAAACAGTAAAGATTTTTTATTTAGGGAGGGAGCTTGAAGATCACCAATCACTTGCTGCACAAAATGTTCAACCAAACTCCTTGTTACATCTTGTTCGTACAAAGATAAATTTGTGGCCAAAGGCACAAAGGGTTCCTGGTGAGAACAAGTCCTTGCGTCCTCCAGGTGCATTCAAGAAAAAGTCTGATCTGTCTGTAAAAGATGGACATGTTTTTCTGATGGAGTATTGTGAAGAAAGGCCTTTACTTTTGAGCAATGTTGGAATGGGTTCAAGACTTTGTACATACTATCAAAAATGTTCACCAGATGACCAATCTGGCTCGTTATTACGCAATACAGATGGTAACTTGGGCCATATCATTTCTCTGGATCCTGCTGATAAATCTCCTTTTCTTGGAGATTTAAAACCTGGTTGCAGCCAGTCATCACTTGAGACAAATATGTATAGAGCACCCATATTTCCTCATAAAGTTCCTTTAACTGACTACCTGCTTGTTCGTTCTTCAAAGGGAAAGCTATCATTAAGGCGCATTGATAAAATTAATGTTGTCGGACAGCAGGAGCCTCTCATGGAGGTATTAGCCCCTGGAAGTAAGAATCTTCAGACTTACATGATGAACAGGCTATTGGTGCACATGTGTCGTGAATTCCAAGCAGCAGAGAAGCGACACTTACCTCCATATATCCGTATTGATGAATTTCTGTCACAGTTTCCTTACCTATCAGAAGCATCATTCCGAAAGAAAATCAAGGAATATGCCAATTTACAGAGGGGAACAAATGGACAGTCTCTTTTGGTTAAAAAGAGAAATTTTCGCATGTGGTCAGAGGATGAATTGAGGAAAATGGTGACACCAGAGCTTGTTTGTGCCTATGAAAGCATGCAAGCTGGCCTATACCGTCTGAAACATTTAGGAATAACTGAAACACATCCTACTAGTATTTCATCTGCAATGAGTCGGCTTCCAGATGAGGCAATAGCACTGGCTGCTGCATCACATATTGAGAGGGAACTGCAAATTACTCCTTGGAACTTGAGTAGCAACTTTGTTGCTTGTACAAGCCAGGGTAAGGAAAATATTGAACGAATGGAAATTACTGGTGTTGGTGATCCATCTGGACGAGGCTTGGGTTTTAGCTATGCTCGGGCACCTCCCAAGGCACCAGTGTCTAGTGCAATGGTGAAGAAGAAAGCAGCTGCTGGCCGTGGAGGTTCCACTGTTACTGGTACAGATGCTGATCTACGTAGATTAAGCATGGAGGCTGCACGAGAGGTTCTTCTTAAGTTCAATGTTCCTGAGGAGGTCATCGCAAAACAAACCAGATGGCATCGCATTGCTATGATACGGAAACTTTCTAGTGAGCAAGCTGCATCTGGGGTTAAGGTTGATCCAACAACTATCAGTAAATATGCTCGTGGCCAGCGAATGTCCTTTCTTCAGTTACAACAGCAGACCAGAGAGAAATGCCAGGAGATTTGGGATCGACAAGTGCAGAGTCTGTCAGCTGTTAATGGTGATGAAAATGAGAGTGATTCAGAGGGGAATAGTGATCTAGATTCTTTTGCTGGAGATCTGGAAAATTTACTTGATGCTGAGGAGTGTGAAGAGGGTGACGAGGGTACCAATGACTTAAAACGTGATAAGGGAGATGGTGTTAAGGGTCTTAAAATGAGAAGACGCCCAACTTTGGCTCAGGCAGAGGAGGAAATAGAAGATGAAGCTGCTGAGGCAGCTGAATTATGCAGGTTGCTTATGGATGATGACGAAGCTGACAGGAAGAAAAGGAAGAAAGCTAGAGTTATAGTAGAAGAAACAAGATTGGTACCGAAGCTGCAATCAAAATATGCCTTTGACAATGCTGAGCAAGTGAAGCAAATAGCAAATACTTTACAACTGGACGGAACTAATCATTTAAAAGGGGATGCAGTCACAGATTTTAGGGAGGAGGAAAACTTTCCTGTGAAAAAAAGCAAATCACTGAAGGTCAATAAAGCCAAGAAGAATGACATTACACCTATCAGTCTTCCCAATAAAAAAATCAAATTAAATATGGGAGAAGGAATTAAGAACCAGGTATTTAAGGAGAAAAAGCCATCAAGGGAAAGTTTTGTTTGTGGGGCATGTGGTCAGCTTGGGCACATGCGCACTAACAAGAACTGTCCAAAATATGGTGAAGATCTAGAAGCACAACTTGAATCTACAGATATGGAAAAATCATCTGGAAAATCCAGCTTTGTAGATCCCTCTAGTCAGTCCCAGCATAAAGCCCCCTCCAAAAAGTCAGTATCGAAAAGTGCAACAAAAGTTGCTCCTGCTGACAATTCAACAAAAATTCCACTGAAATTCAAATGCAGCTCCACAGAGAAATCTTCTGATAAACCTGCAGTAGAAACCCTGCAGAGTTCTGACAAACCAGTTACTTCTGACTCAGAAACTACAAAGTCTGCCAAGGTTAATAAAATAATTATTCCCAACAAAGTGAAACCAGATGATATGCAGGCTGAATCTCATAAGCATGCTATTGTTATACGGCCTCCTACTGATTCAGGTAGAGGTCAGGTTGATTCTCATAAGCTCCCTATTAAAATACGCCCACCTACAGAAATAGATAGGGAGCAAAGTCACAAAAAGATTATTATAAAACGTACAAAAGAGGTTGTTGATCTGGAATTGGACAGTCCAGGTGGAAACACAGGGCTTGAACACAGAAAAACTAGAAGAATCGTTGAATTGTCAAACTTTGAGAAACACAAAAAACCAGAGACCATGTATGGAACTGAAGGTTTGGTGAAATGGAATACTAAGGAGGATAGAAGGTGGTGGGAAGAGCAAGAGAAACGAAGAAATGAAGCGAGACTAAGAGAAGACAGAGCAAGGAGGCATCACAAAGAAGAAATCAGGATGCTCAAAGAGCAAGAAAGGTTGGATGAGATAAAAAAATATGAAGAAGATATTAGGAGAGAGAGGGAGGAGGAAGAACGGCAAAAAGCTAAGAAGAAAAAGAAGAAGAAGAAGCCTGATTTAAGAGATGAGTATTTAGATGACCCCAGAACCAGAAGATATGATAAGAGAGTGCCAGAAAGAGACCGGAGTGGAAAAAGGAGATCTGTTGTTGAGTTAGGAAAGATTAGTGCAGATTATATGCCACCAACAAAACGCCGAAGAGGGGGAGGGGGAGAGGTTGGTTTGGCAAATATCTTGGAGAGCATAGTGGATACTATCGTGAAAGAGAAGTATGAACTGTCTTACCTTTTCCTGAAACCAGTGTCCAAGAAGGAGGCTCCCGACTACCTGGACATTATAGAGACGCCTATGGATCTTTCCAGAATCAGGGAGAGGGTACGGAATATGGAGTACAAGAGCCGCGAAGATTTCAGGCATGATATCTGGCAGATTACTTATAATGCCCATAAATATAATGATGGGCGAAATCCGGGAATTCCTCCCCTTGCAGATATGCTTTTGGAATATTGTGATTATTTGTTGAATGAGAATGACGATAGCCTCACTGCAGCAGAAGCTGGTATTGAAATTAGAGATTTCTAA 5655 0.4145 MGYDSDSPSQDGRDEDDEEEYEESGRGNRFLGFMFGNVDNSGDLDVDYLDEDAKEHLSALADKLGPSLTDIDLSGKSPQTPPDAVEQDCDEKAEDAVDYEDIDEEYDGPETEAANEEDHLLPKKEFFSTEVAVEVLESKTSVFDDENYDEESEKEQDIVNDDSKGEQEESFVDASKEESALEQELQVGSLQTEELDSDVQKLEEEGSEVQKRSMSMPLPVLCVEDGMTILRFSEIFGIHEPLRKGEKREHRHPIPRDRYQSLDLTDDIVEEDEEDFLKGFSHSLSLTKHVCVVHNDVSEIDDVDLEFPKFGFLHGDASMAGKDDRQPKDSCLCAEPMKGDLTEDISGKDHPFMWANFYPLDQRDWEDEILWGNSPVQSRSNVESCEISGPELGASGGSEIEIESGIQNLHIEPQEMLEENDHIVFKCSSPVSLEPFGSRHSSGAKTNSMSRSLFHPQLLRLESRFEVDAANLVDGKGADISEKHTQNGQIKRFTKVISQNRDMMEGSWLDNIIWEDLDRATVKQKLIFDLQDDQMHFEVLESKDGTHLRLHAGAMILTRSLKSSGGDSSELPGHGSQYGWRYVANDKHYSNRKTSQQLKSNSKKRSAHGVKVFHSQPALKLQTMKLKLSNKDIANFHRPKALWYPHDNEVAVKEQGKLPTQGPMKVIIKSLGGKGSKLHVDAEETLSSVKVKASKKLDFKASETVKIFYLGRELEDHQSLAAQNVQPNSLLHLVRTKINLWPKAQRVPGENKSLRPPGAFKKKSDLSVKDGHVFLMEYCEERPLLLSNVGMGSRLCTYYQKCSPDDQSGSLLRNTDGNLGHIISLDPADKSPFLGDLKPGCSQSSLETNMYRAPIFPHKVPLTDYLLVRSSKGKLSLRRIDKINVVGQQEPLMEVLAPGSKNLQTYMMNRLLVHMCREFQAAEKRHLPPYIRIDEFLSQFPYLSEASFRKKIKEYANLQRGTNGQSLLVKKRNFRMWSEDELRKMVTPELVCAYESMQAGLYRLKHLGITETHPTSISSAMSRLPDEAIALAAASHIERELQITPWNLSSNFVACTSQGKENIERMEITGVGDPSGRGLGFSYARAPPKAPVSSAMVKKKAAAGRGGSTVTGTDADLRRLSMEAAREVLLKFNVPEEVIAKQTRWHRIAMIRKLSSEQAASGVKVDPTTISKYARGQRMSFLQLQQQTREKCQEIWDRQVQSLSAVNGDENESDSEGNSDLDSFAGDLENLLDAEECEEGDEGTNDLKRDKGDGVKGLKMRRRPTLAQAEEEIEDEAAEAAELCRLLMDDDEADRKKRKKARVIVEETRLVPKLQSKYAFDNAEQVKQIANTLQLDGTNHLKGDAVTDFREEENFPVKKSKSLKVNKAKKNDITPISLPNKKIKLNMGEGIKNQVFKEKKPSRESFVCGACGQLGHMRTNKNCPKYGEDLEAQLESTDMEKSSGKSSFVDPSSQSQHKAPSKKSVSKSATKVAPADNSTKIPLKFKCSSTEKSSDKPAVETLQSSDKPVTSDSETTKSAKVNKIIIPNKVKPDDMQAESHKHAIVIRPPTDSGRGQVDSHKLPIKIRPPTEIDREQSHKKIIIKRTKEVVDLELDSPGGNTGLEHRKTRRIVELSNFEKHKKPETMYGTEGLVKWNTKEDRRWWEEQEKRRNEARLREDRARRHHKEEIRMLKEQERLDEIKKYEEDIRREREEEERQKAKKKKKKKKPDLRDEYLDDPRTRRYDKRVPERDRSGKRRSVVELGKISADYMPPTKRRRGGGGEVGLANILESIVDTIVKEKYELSYLFLKPVSKKEAPDYLDIIETPMDLSRIRERVRNMEYKSREDFRHDIWQITYNAHKYNDGRNPGIPPLADMLLEYCDYLLNENDDSLTAAEAGIEIRDF* 1885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g1848 1884 MobiDBLite consensus disorder prediction 1237 1267 - -
Apr7g1848 1884 ProSiteProfiles Ubiquitin domain profile. 664 734 IPR000626 GO:0005515
Apr7g1848 1884 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 14 1294 IPR040240 GO:0001091|GO:0004402|GO:0005669|GO:0006366|GO:0017025
Apr7g1848 1884 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 1392 1879 IPR040240 GO:0001091|GO:0004402|GO:0005669|GO:0006366|GO:0017025
Apr7g1848 1884 SUPERFAMILY Bromodomain 1750 1870 IPR036427 GO:0005515
Apr7g1848 1884 MobiDBLite consensus disorder prediction 1533 1547 - -
Apr7g1848 1884 MobiDBLite consensus disorder prediction 1689 1739 - -
Apr7g1848 1884 ProSiteProfiles Bromodomain profile. 1780 1850 IPR001487 GO:0005515
Apr7g1848 1884 ProSitePatterns Bromodomain signature. 1785 1842 IPR018359 -
Apr7g1848 1884 Pfam Protein of unknown function (DUF3591) 584 1150 IPR022591 -
Apr7g1848 1884 CDD Ubl_TAFs_like 664 735 - -
Apr7g1848 1884 MobiDBLite consensus disorder prediction 1482 1517 - -
Apr7g1848 1884 CDD Bromodomain 1769 1865 - -
Apr7g1848 1884 Gene3D - 646 736 - -
Apr7g1848 1884 MobiDBLite consensus disorder prediction 65 92 - -
Apr7g1848 1884 Gene3D - 1744 1882 IPR036427 GO:0005515
Apr7g1848 1884 MobiDBLite consensus disorder prediction 1435 1517 - -
Apr7g1848 1884 MobiDBLite consensus disorder prediction 103 122 - -
Apr7g1848 1884 Pfam Ubiquitin family 667 736 IPR000626 GO:0005515
Apr7g1848 1884 Coils Coil 1674 1708 - -
Apr7g1848 1884 MobiDBLite consensus disorder prediction 157 180 - -
Apr7g1848 1884 MobiDBLite consensus disorder prediction 1 32 - -
Apr7g1848 1884 MobiDBLite consensus disorder prediction 142 198 - -
Apr7g1848 1884 Pfam Bromodomain 1771 1846 IPR001487 GO:0005515
Apr7g1848 1884 SMART bromo_6 1763 1870 IPR001487 GO:0005515
Apr7g1848 1884 SUPERFAMILY TAF(II)230 TBP-binding fragment 24 62 IPR036741 -
Apr7g1848 1884 PRINTS Bromodomain signature 1783 1796 IPR001487 GO:0005515
Apr7g1848 1884 PRINTS Bromodomain signature 1797 1813 IPR001487 GO:0005515
Apr7g1848 1884 PRINTS Bromodomain signature 1813 1831 IPR001487 GO:0005515
Apr7g1848 1884 PRINTS Bromodomain signature 1831 1850 IPR001487 GO:0005515
Apr7g1848 1884 SMART ubq_7 664 736 IPR000626 GO:0005515
Apr7g1848 1884 MobiDBLite consensus disorder prediction 1709 1739 - -
Apr7g1848 1884 MobiDBLite consensus disorder prediction 1205 1224 - -
Apr7g1848 1884 Gene3D - 22 68 IPR036741 -
Apr7g1848 1884 Coils Coil 192 212 - -
Apr7g1848 1884 MobiDBLite consensus disorder prediction 1530 1561 - -
Apr7g1848 1884 Coils Coil 1266 1286 - -
Apr7g1848 1884 SUPERFAMILY Ubiquitin-like 634 734 IPR029071 -
Apr7g1848 1884 PANTHER BNAA01G26290D PROTEIN 1392 1879 - -
Apr7g1848 1884 PANTHER BNAA01G26290D PROTEIN 14 1294 - -
Apr7g1848 1884 MobiDBLite consensus disorder prediction 1242 1267 - -
Apr7g1848 1884 MobiDBLite consensus disorder prediction 1439 1475 - -
Apr7g1848 1884 Pfam TATA box-binding protein binding 18 61 IPR009067 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g1848 664 734 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 35.211 8.22e-07 48.9