Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g1846 ATGGACGATGACGATGGACACTCCTTCGCCAACAACGTTATTGTCATACTAATTGCCATGGGTTCAGCAGCTTTTGTGGTCTCAACGTACCAAATCATAGCTACCTTCTTATGCAACAAGCGCATCATCACAGACCAAAACCCATCACAACAACAACACCCACTTCCAACAATAACCACAACCACTTCCTTCGCAACACAGCCACAAATGATTCCAACCCACAAATACCATAAAAAGAAAGTTGATAATGTTTCAGGTGATGGTGATGAAGGTGACACGTGTGCGGTTTGTTTGGGAGATTTTGAGGAAGGTGAGGAGTTGAGGACTATGCCCGAGTGCCTGCACTATTTCCACGTACCATGCATTGATATCTGGCTCAGTTCACACTCAAGTTGCCCCGTTTGCCGTGCCAGTGCCACGCCTTCTCTTGAGATGCTTCACTCTAATCATGATCACAGCATAGATATGGCTCAGTTTGGGGTTGCCCATAGTGAGTTTGTGATACGACGGTGA 513 0.462 MDDDDGHSFANNVIVILIAMGSAAFVVSTYQIIATFLCNKRIITDQNPSQQQHPLPTITTTTSFATQPQMIPTHKYHKKKVDNVSGDGDEGDTCAVCLGDFEEGEELRTMPECLHYFHVPCIDIWLSSHSSCPVCRASATPSLEMLHSNHDHSIDMAQFGVAHSEFVIRR* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g1846 170 SMART ring_2 94 135 IPR001841 -
Apr7g1846 170 PANTHER CHROMATIN REGULATOR PHD FAMILY-RELATED 2 166 - -
Apr7g1846 170 ProSiteProfiles Zinc finger RING-type profile. 94 136 IPR001841 -
Apr7g1846 170 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 2 166 IPR044675 -
Apr7g1846 170 Pfam Ring finger domain 92 136 IPR001841 -
Apr7g1846 170 SUPERFAMILY RING/U-box 86 143 - -
Apr7g1846 170 CDD RING-H2_PA-TM-RING 93 136 - -
Apr7g1846 170 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 49 142 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g1846 Apr-Chr7 25746744 25747256 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g1846 9 138 C3H Transcription Factor Family AT3G10910 35.507 2.05e-20 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g1846 - - aprc:113870478 357.836