Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g1839 ATGGAGTCCAGTGAGCATGAGAGCGGGTCAGTTCGAGAGGTCCATGCAAATGGAAGCCGCATGATTGCATCAGAAGTTGAGGCCAAGCTTGATCAAGGAAATATTCAAGAGGCAGAAGATGCATTGCGAGACGGGTTGTCACTCAATTTTGAGGAAGCAAGAGCTCTTCTTGGAAAGTTGGAGTATCAGAGAGGTAATGTAGAAGGTGCGCTTCGTGTGTTTGATGGGATTGATCTCCAAGCTGCCATTCAGCGATTGCAACCATCCTTTTCTGAAAAATTGCCAGTCAAGAAAGGTCGCACTCACACTGAATCACCTTTGTCAGCCTCTCAGCATGCTGCTAGTTTGGTGCTTGAAGCCATCTACTTAAAAGCAAAGTCTCTACAAAAACTGGGGAAATTTACTGAGGCTGCTAATGATTGTAAACGTATTCTTGATGCTGTTGAGAAGATAGTCTATCAGGGTATACCTGTTATTCAAGTGGATAATAAATTGCAAGAGATAGTCAGCCATGCAGTAGAGCTCCTTCCAGGGCTCTGGAAACTAGCTGGTTGTTATGACGAGGCAATCTATGCTTATAGGCGTGCTCTCCTTAGTCAATGGAACCTTGATAATGATTGTTGTGCAAGAATTCAGAAATCATTTGTTGTTTTTTTGCTGTACAGTGGGGTGGAAGCAAGTCCACCTAGTTTAGCAGTTCAGATTGATGGATCATATGTACCCAAAAATAATCTTGAAGAGGCCATTCTGATATTGATGATCCTTTTGAAAAAGTTTTGCCTTGGTAAGATGCAATGGGATCCTTCTGTCCTGGAGCATCTGACTTTTGCTCTTTCTATATGCAGCCAAACTTCTATTTTAGCAAAGCAACTTGAAGACTTGATGCCTGGAGTATACCATCGGGTTGATCGCTGGAATTCTTTAGCCTTATGTCATAGTGGAGCTGAACAAAATGACAGTGCTTTGAATCTGCTAAGGAAGTCTTTGCACAAACATGAACGACCAAATGACCTTACATCACTATTGTTAGCTGCCAGGATCTGCAGTGAGGATCCCCATCTTGCTGCTGAGGGAGTGAGCCATGCGCAGAGGGCAATCCGAAATGCACATGGCCCAAAGGAGCATTTGAAAGGTGTTGCTCTTCGGATCTTGGGACTTTGTCTGCGAAAGCAAGCTAAGATTGCTTCCTCTGACTTCGAAAGGTCTCACCTTCAGTCCAAAGCACTGGAGTCATTGGAGGAGGCAATTAGATTGGAACCAAACAATGCTGATTTGATTTTTGAGTTGGCTGTTCAGTATGCAGAGAACCGGAATTTGACTGCTGCTTTGCGATATGCGAGGCATTTCTTTAATGTAACAGGTGGTTCTGTATTGAAAGCTTGGAGATTGCTTGCTCTAATTTTGTCTGCACAACAAAGATTTTCAGAAGCTGAAGTGGTGACAGATACAGCTTTAGATCAGACTGCAAGATGGGAGCAGGGGCCATTGCTTAGGCTCAAAGTAAAGCTGAAGGTCTCCCAATCACAACCAATGGATGCTACTGAAACTTACCGGTACCTTCTTGCATTGGTTCAAGCCCAAAGGCGATCCTATGGGTCTCTCCGAATTAGTTCAAAGGTTGAGGATGATAAAGTAAATGAATTTGATATTTGGCATGGTCTGGCAAATTTATATGCCAGTCTTTGTCATTGGAAGGATGCTGAAATCTGTTTGCAAAAGGCCAGGGAGTTGAAGGAATACTCTGCAGCATTGATGCACACTGAAGGTGTTTTGTTTGAAGGACGTGGGCAAAATAAGGAAGCTCTTCATGCTACCATTAATGCTGTACTGCTTGACCCAAACTATGTTCCATGCAAGATCTCGATGGGTGCTTTAATTCAAAGAATGGGTTCAAAGGATTTGGCTACTGCAAAAAGCTTACTGTCTGATGCACTCAGAATAGAACCGACAAACCGCATGGCTTGGTATTACTTGGGATTGGTTCACAAGCATGATGGCCGAATAAGTGATGCCGCTGACTGCTTTCAAGCAGCGTCCATGCTTGAAGAATCTGATCCCATCGAAAGTTTCAGCTCTGTACTTTGA 2085 0.4355 MESSEHESGSVREVHANGSRMIASEVEAKLDQGNIQEAEDALRDGLSLNFEEARALLGKLEYQRGNVEGALRVFDGIDLQAAIQRLQPSFSEKLPVKKGRTHTESPLSASQHAASLVLEAIYLKAKSLQKLGKFTEAANDCKRILDAVEKIVYQGIPVIQVDNKLQEIVSHAVELLPGLWKLAGCYDEAIYAYRRALLSQWNLDNDCCARIQKSFVVFLLYSGVEASPPSLAVQIDGSYVPKNNLEEAILILMILLKKFCLGKMQWDPSVLEHLTFALSICSQTSILAKQLEDLMPGVYHRVDRWNSLALCHSGAEQNDSALNLLRKSLHKHERPNDLTSLLLAARICSEDPHLAAEGVSHAQRAIRNAHGPKEHLKGVALRILGLCLRKQAKIASSDFERSHLQSKALESLEEAIRLEPNNADLIFELAVQYAENRNLTAALRYARHFFNVTGGSVLKAWRLLALILSAQQRFSEAEVVTDTALDQTARWEQGPLLRLKVKLKVSQSQPMDATETYRYLLALVQAQRRSYGSLRISSKVEDDKVNEFDIWHGLANLYASLCHWKDAEICLQKARELKEYSAALMHTEGVLFEGRGQNKEALHATINAVLLDPNYVPCKISMGALIQRMGSKDLATAKSLLSDALRIEPTNRMAWYYLGLVHKHDGRISDAADCFQAASMLEESDPIESFSSVL* 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g1839 694 PANTHER PROTEIN NPG1 1 693 IPR043376 -
Apr7g1839 694 PANTHER CALMODULIN-BINDING PROTEIN 1 693 - -
Apr7g1839 694 SUPERFAMILY TPR-like 118 444 IPR011990 GO:0005515
Apr7g1839 694 Gene3D Tetratricopeptide repeat domain 243 455 IPR011990 GO:0005515
Apr7g1839 694 SUPERFAMILY TPR-like 403 678 IPR011990 GO:0005515
Apr7g1839 694 SMART tpr_5 458 491 IPR019734 GO:0005515
Apr7g1839 694 SMART tpr_5 582 615 IPR019734 GO:0005515
Apr7g1839 694 SMART tpr_5 302 335 IPR019734 GO:0005515
Apr7g1839 694 SMART tpr_5 652 685 IPR019734 GO:0005515
Apr7g1839 694 SMART tpr_5 378 422 IPR019734 GO:0005515
Apr7g1839 694 SMART tpr_5 118 151 IPR019734 GO:0005515
Apr7g1839 694 SMART tpr_5 548 581 IPR019734 GO:0005515
Apr7g1839 694 Pfam Tetratricopeptide repeat 630 678 - -
Apr7g1839 694 Pfam Tetratricopeptide repeat 28 75 - -
Apr7g1839 694 SUPERFAMILY TPR-like 30 147 IPR011990 GO:0005515
Apr7g1839 694 Gene3D Tetratricopeptide repeat domain 19 219 IPR011990 GO:0005515
Apr7g1839 694 Gene3D Tetratricopeptide repeat domain 460 688 IPR011990 GO:0005515
Apr7g1839 694 ProSiteProfiles TPR repeat profile. 652 685 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g1839 Apr-Chr7 25701355 25707238 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g1839 3 694 Calmodulin-binding Proteins AT2G43040 70.833 0.0 977
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g1839 K21843 - gmx:100814609 1185.63