Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g1835 ATGGCGGTGGAATTGACGGAAGGGGCAATTTTGATGATGTGCGATAACAATTTCTCTTCGGAGGAGTTGATGCCGGTGCTGCAAGTTATCGAACTGAAGCAGGTGCAGTCGCAGCAAAACAGCGCCACCGAGAGGTACCGCTTGGCGCTTTCCGATGGTTCGCATTACCTGCAAGGAATGCTCGCAACGCAGAAGAACGAGTTGGTGCATTCTGGAAGGTTGCAGAAAGGTTCCGTTATTAAGCTTACTCAGTTCATCTGCAACGTTGTGCAGAACCGCAAGATTATTATCACCATTGAGCTAGAGATTGTGCTAGACAAATGTGAATTGATTGGACAACCTGTCTCACCACCAAGAAATGGAGTTGTACAATCTGCTACTGGTCAATCAGGAACCGACCATGGGAATTCAGAATCTGTAAGTAACCGTTCACATGCAGGTGGTATGAATGCTAGACCAATGTCTGTGGATCCAAAAGTGAATCCTCCTGCTAGCAGTGTTTATTCTAGTAATTCTGACTCTGTAAGACATGGTACATCTAATGCCCCTCCTGCTTATCATAAAGCAGAGCCCAGAGTCAGTTTGCCAAGATCAGCACCATTTGGTGGGTCTTATGTTGATCAGAACCCAGGTTTCCGCAATCCCCAATCAGAGGCTTCAAGGCCCATGCAAAATTCTTATGTTCATCCACCTCAGCCTATGTACCGGCAGCCATCTCCTATGTACAATAACAGAGGGCCAATTGGAAGAAATGAAGCGCCCCCTCGGATAATTCCAATAGCCGCATTGAATCCATACCAGAATATGTGGACAGTTAAAGCTAGAGTAACAGCTAAGGGAGAACTCAGGCACTATAACAATGCCAAAGGTGATGGCAAAGTGTTTTCTTTTGATCTTCTGGATTCTGAAGGTGGAGAAATTCGGGCAACTTGCTTCAACACTGTGGCTGACCAATTCTATAATTTAATTGAAGCTGGCAAGGTATATCTTGTTTCCAGGGGGAACATAAAGCCAGCTCAAAAAAACTTTAATCACCTTCGCAATGATCAAGAGCTAACCCTTGATATGTCAACAATTATACAGCCTTGCCTTGATGATGACAACTCAATTCCGAAGCAGACATTTAATTTCCGTTCCATTGGTGAAATTGAAAGTGTGGAAAGCAACAGCATTGTGGATGTTATTGGTGTGGTGTCTTCTATTAGTCCCACAGCTTCAATCATGAGAAAAAATGGCACTGAAACTCAGAAGAGAACTCTACAGTTGAAAGACATGTCTGGACGAAGTGTGGAGTTAACATTATGGGGAAATTTTTGCAATGCAGAAGGACAAAGGCTGCAAAATATTTGTGATTCTGGGGCAATTCCAGTTTTGGCTGTAAAAGCTGTCCGGGTAAATGATTTTAATGGGAAGTCTGTTGGGACTATAGCTACTAGTCAGCTATTTGTAGAGCCTGATTTTCCTGAGGTTTATACATTGAAAGACTGGTTTGCCAAGGAAGGGAAGAATGTCCCAACTCTCTCTATTTCTAGAGAAGCATCTAATTTTGTTAAGACTGATGTGCGGAAGACTATATCTCAAATTAAAGATGAGAAGTTAGGGACTTCAGAGAAGCCTGATTGGATATCTGTCTGTGCAAGAATTTCATACATTAAAGTTGATAATTTCTGTTACACAGCATGCCCTATCATGGTAGGGGATCGGCAATGTAACAAAAAGGTGACTAATAACGGAGATGGGAAATGGCGCTGTGACAGATGTGATCAGTCTATTGATGCTTGCGATTATAGGTACATACTGCAATTCCAGATACAGGATCACACAGGCATAACATGGGTCACTGCTTTCCAGGAGAGTGGTGAGGAGATCATGGGGATACCTGCGAATGATTTGTATTTTCTGAAATTTGAAGAGCAAGATGATGAAAGATTTGCAGAAATCATTCGTAAGGTTCTCCTTGCCAAGTATGTGTTCAAGTTAAAAGTAAAAGAGGAGACATTCAGTGATGAACAACGTGTCAAGTCAACAGTAGTAAAAGCAGACAGGGTAAATTTTGCATCTGAATCTAGAGTTCTTTTGGATTTGATTGATAAACTCAGGGCCGAGAAATCAGAATGTACTCTTCCAAATTCTGTAATCAATAATACTGGACTGGGGAACATTGAAACTGGACAAGTTATGCCACCAGTTTATAATCCTATAAAGAGCAACGCTGATAACAGTAGAGATTATGGGATGCCAGCAAACCAAGTGGGTCAGTATGGAAACCAATATATCAAATATGCTTCAGCAGGTGCTCCCGGTTCATATATGTCATCATGTAGCAATTGTGGAGGCTCTGGTCATAGCTCTATACTTTGCCCAAATATTAGAAATATACCTGCACAGTCTGGGGGAGGGGCCTTTGCTAACAGGGCATCTAGTGGGGGTGCATCTGGCGAATGCTTTAAATGCCATCAAACTGGCCACTGGGCAAGAGACTGTCCTGGTTTCAGTGCAGCTCCTCCGGCATATGGAAGTACTAATGTGATGCAAGGAAGATATGGGGTTGCTCAGAAGCAACAGTTTGGAGGATATTGA 2580 0.4275 MAVELTEGAILMMCDNNFSSEELMPVLQVIELKQVQSQQNSATERYRLALSDGSHYLQGMLATQKNELVHSGRLQKGSVIKLTQFICNVVQNRKIIITIELEIVLDKCELIGQPVSPPRNGVVQSATGQSGTDHGNSESVSNRSHAGGMNARPMSVDPKVNPPASSVYSSNSDSVRHGTSNAPPAYHKAEPRVSLPRSAPFGGSYVDQNPGFRNPQSEASRPMQNSYVHPPQPMYRQPSPMYNNRGPIGRNEAPPRIIPIAALNPYQNMWTVKARVTAKGELRHYNNAKGDGKVFSFDLLDSEGGEIRATCFNTVADQFYNLIEAGKVYLVSRGNIKPAQKNFNHLRNDQELTLDMSTIIQPCLDDDNSIPKQTFNFRSIGEIESVESNSIVDVIGVVSSISPTASIMRKNGTETQKRTLQLKDMSGRSVELTLWGNFCNAEGQRLQNICDSGAIPVLAVKAVRVNDFNGKSVGTIATSQLFVEPDFPEVYTLKDWFAKEGKNVPTLSISREASNFVKTDVRKTISQIKDEKLGTSEKPDWISVCARISYIKVDNFCYTACPIMVGDRQCNKKVTNNGDGKWRCDRCDQSIDACDYRYILQFQIQDHTGITWVTAFQESGEEIMGIPANDLYFLKFEEQDDERFAEIIRKVLLAKYVFKLKVKEETFSDEQRVKSTVVKADRVNFASESRVLLDLIDKLRAEKSECTLPNSVINNTGLGNIETGQVMPPVYNPIKSNADNSRDYGMPANQVGQYGNQYIKYASAGAPGSYMSSCSNCGGSGHSSILCPNIRNIPAQSGGGAFANRASSGGASGECFKCHQTGHWARDCPGFSAAPPAYGSTNVMQGRYGVAQKQQFGGY* 860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g1835 859 Gene3D - 3 117 IPR012340 -
Apr7g1835 859 PANTHER REPLICATION FACTOR A 1, RFA1 3 735 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Apr7g1835 859 Pfam Zinc knuckle 814 829 IPR001878 GO:0003676|GO:0008270
Apr7g1835 859 MobiDBLite consensus disorder prediction 116 226 - -
Apr7g1835 859 Pfam Replication factor-A C terminal domain 541 692 IPR013955 -
Apr7g1835 859 Gene3D - 770 834 - -
Apr7g1835 859 SUPERFAMILY Nucleic acid-binding proteins 256 370 IPR012340 -
Apr7g1835 859 Gene3D - 509 699 IPR012340 -
Apr7g1835 859 SUPERFAMILY Retrovirus zinc finger-like domains 798 833 IPR036875 GO:0003676|GO:0008270
Apr7g1835 859 MobiDBLite consensus disorder prediction 209 226 - -
Apr7g1835 859 CDD RPA1_DBD_A 259 362 - -
Apr7g1835 859 Pfam Replication protein A OB domain 380 483 IPR031657 -
Apr7g1835 859 PANTHER REPLICATION PROTEIN A SUBUNIT 3 735 - -
Apr7g1835 859 MobiDBLite consensus disorder prediction 162 179 - -
Apr7g1835 859 Gene3D - 368 508 IPR012340 -
Apr7g1835 859 Gene3D - 256 366 IPR012340 -
Apr7g1835 859 CDD RPA1_DBD_C 525 698 IPR013955 -
Apr7g1835 859 SUPERFAMILY Nucleic acid-binding proteins 1 112 IPR012340 -
Apr7g1835 859 SMART c2hcfinal6 814 830 IPR001878 GO:0003676|GO:0008270
Apr7g1835 859 SMART c2hcfinal6 773 789 IPR001878 GO:0003676|GO:0008270
Apr7g1835 859 MobiDBLite consensus disorder prediction 118 148 - -
Apr7g1835 859 Pfam Replication factor-A protein 1, N-terminal domain 5 104 IPR007199 GO:0003677|GO:0005634|GO:0006260
Apr7g1835 859 SUPERFAMILY Nucleic acid-binding proteins 522 699 IPR012340 -
Apr7g1835 859 SUPERFAMILY Nucleic acid-binding proteins 375 504 IPR012340 -
Apr7g1835 859 Pfam OB-fold nucleic acid binding domain 270 351 IPR004365 GO:0003676
Apr7g1835 859 CDD RPA1N 8 104 IPR007199 GO:0003677|GO:0005634|GO:0006260
Apr7g1835 859 ProSiteProfiles Zinc finger CCHC-type profile. 815 829 IPR001878 GO:0003676|GO:0008270
Apr7g1835 859 CDD RPA1_DBD_B 391 497 - -
Apr7g1835 859 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 232 698 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g1835 Apr-Chr7 25674134 25677680 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g1835 1 803 Core DNA Replication Machinery Family AT5G45400 51.568 0.0 861
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g1835 K07466 - gmx:100778597 1256.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g1835 7 25674134 25677680 Apr7g1835 7 25674134 25677680 ECH