Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g1808 ATGGGTCGGAAACACGACGTCGTTTTGCTCAGCGAACCAGTCGCCGAAGAAGCCCCCAACAGCCCCGAACTCGAATCAGAGAAGAAGAAGAAGAAAAAGAAGAAGAACAAAGACAAGCATCAAAACGAAACAAGCCCCAAACGAAAGCTCGACCAACTCGACCTTCAAAACGGCACCGAATTGAAGAAGAAGAAAAAGAAGAAGCACCACGAGTCGAAGGAGAGCGCCGAGGAAACCAACGGCAACAACAACACTAACGGCACTAACCATGACGAAACGGTGACGGATGGTTCCGTGGTGGTTACTGGTAAGAATGTCGGCAACGCGAAATATGCGGCGGTGAAAACATTTGCGGATTCGGGGCTACCGGAGAACGTGCTGGAGTGCTGCAAGGGTTTCGAGAAGCCTTCGCCGATTCAGTCCCGAGCGTGGCCTTTCTTGTTGGACGGTCGTGATTTGATTGGAATCGCAGCCACTGGCTCAGGGAAGACGTTGGCTTTCGGCATACCGGCAATTATGCATGTTCTGAGAAAGCGTAAGAGTAAAGGTTCCAAGGGTCGGAATCCTCTTTGCCTCGTGCTCTCTCCCACCAGAGAGCTTGCACAACAAATATCAGATGTCATGTGTGATGCTGGTAGTTCTTGTGGTGTGGAATCGATCTGTTTGTATGGTGGAACCTCCAAAGGGCCACAAATCTCCTCACTAAAATCTGGTGTTGATATTGTCATTGGAACCCCTGGTCGTATCCAGGATCTGATTGAAATGGGTGTCTGCTGCCTTAAAGATGTATCTTTTGTGGTACTTGATGAAGCAGATCGGATGCTTGACATGGGTTTTGAACAAGTAGTTCGCTCTATACTGGGTCAGACATGTTCTGTTCGTCAAATGGTTATGTTTAGTGCTACATGGCCTTTACCAGTTCATCACTTGGCACAGGAGTTTATGGACCCCAATCCTGTAAAAGTTGTTGTAGGTTCAGAAGATTTAGCTGCCAATCATGATGTCATGCAGATAGTTGAGGTCTTGGATGACCGTTCACGTGATAAACGCCTGGTTGCTTTGCTGGAAAAGTACCACAAATCTCAAAGGAATCGAGTATTGGTTTTTGTTTTATACAAATGGGAAACCACACGAGTTGAAAATATGCTTCAAGAAGGGGGTTGGAAGGTTGTGTCAATACATGGGGACAAAGCCCAGCATGATCGCACAAAGGCACTGTCATTATTCAAGAAGGGGAGCTGTCCTTTGATGATTGCTACTGATGTGGCTGCCCGGGGATTGGACATTCCAGATGTTGAAGTAGTGATCAACTACAGTTTTCCTCTGACCACAGAAGATTATGTTCATAGAATTGGGCGGACTGGACGAGCTGGTAAGAAAGGTGTTGCCCATACATTCTTCACGCAGCAGAATAAGGGGCTTGCTGGGGAGCTGGTGAATGTTTTAAGAGAAGCAGGGCAAATTGTGCCAGATGCCCTCTTGAAGTTTGGCACGCATGTAAAGAAAAAGGAGTCCAAGCTTTATGGGGCTCATTTCAAGGAAATTCCTGTTGATGCTCCAAAGTCTCAAAAAATTACATTTGACAACTCTGATGATGAAGACTAA 1605 0.466 MGRKHDVVLLSEPVAEEAPNSPELESEKKKKKKKKNKDKHQNETSPKRKLDQLDLQNGTELKKKKKKKHHESKESAEETNGNNNTNGTNHDETVTDGSVVVTGKNVGNAKYAAVKTFADSGLPENVLECCKGFEKPSPIQSRAWPFLLDGRDLIGIAATGSGKTLAFGIPAIMHVLRKRKSKGSKGRNPLCLVLSPTRELAQQISDVMCDAGSSCGVESICLYGGTSKGPQISSLKSGVDIVIGTPGRIQDLIEMGVCCLKDVSFVVLDEADRMLDMGFEQVVRSILGQTCSVRQMVMFSATWPLPVHHLAQEFMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDKRLVALLEKYHKSQRNRVLVFVLYKWETTRVENMLQEGGWKVVSIHGDKAQHDRTKALSLFKKGSCPLMIATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVAHTFFTQQNKGLAGELVNVLREAGQIVPDALLKFGTHVKKKESKLYGAHFKEIPVDAPKSQKITFDNSDDED* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g1808 534 CDD SF2_C_DEAD 335 467 - -
Apr7g1808 534 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 267 275 IPR000629 -
Apr7g1808 534 Gene3D - 325 500 IPR027417 -
Apr7g1808 534 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 346 497 IPR001650 -
Apr7g1808 534 MobiDBLite consensus disorder prediction 78 95 - -
Apr7g1808 534 Gene3D - 56 324 IPR027417 -
Apr7g1808 534 PANTHER BNAA08G07020D PROTEIN 10 520 - -
Apr7g1808 534 SMART ultradead3 132 338 IPR014001 -
Apr7g1808 534 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 10 520 - -
Apr7g1808 534 Coils Coil 23 43 - -
Apr7g1808 534 MobiDBLite consensus disorder prediction 1 95 - -
Apr7g1808 534 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 115 141 IPR014014 GO:0003724
Apr7g1808 534 SMART helicmild6 377 458 IPR001650 -
Apr7g1808 534 Pfam DEAD/DEAH box helicase 138 305 IPR011545 GO:0003676|GO:0005524
Apr7g1808 534 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 471 IPR027417 -
Apr7g1808 534 CDD DEADc 131 322 - -
Apr7g1808 534 MobiDBLite consensus disorder prediction 39 61 - -
Apr7g1808 534 Pfam Helicase conserved C-terminal domain 349 458 IPR001650 -
Apr7g1808 534 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 144 321 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g1808 Apr-Chr7 25464204 25469126 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g1808 114 466 Eukaryotic Initiation Factors Gene Family AT3G19760 33.521 1.06e-55 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g1808 K14811 - gmx:100305353 915.99