Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g1766 ATGAGAAGAAGCAGAGGAAAACAGCACTGCGCTGCGGAGGAGCCTTCTTCTAACTCTCATTCCGTCACCCTGGGTGAAGGTGTTAATGTTAACATCACTGACACTGTTATGCCTCAAGATCACGGTAAAGGAGAAAGTGATGTCTCAGAGCTCAATATCATCGGTGACGTAACAGGTGAAACCGATCGCGGTTGTAGTTCGATCAAGACCAAGGAAGGAGACGGTGAGATTGATTTTAATGCTAGGCTTGATAAGTTACTTAATAACATCGAAGAACCTGAATTGTCTGAGGAAGAGACCAGAATCAATGATCAGTTGCAGCAAGATGAGATACTTGTTGTGGAGTCAATTTATGGAGAAGACGTTTTCAGCCTTGAGAGATGGAAAGGCCTGCATTGTTTTCAGATACATATACACATTGATGTTTTGGGAGAAATTGCCATTACAGCTAAGCTGAACTCTTCCAATGAACATGATATTGTTAGCAGCAATTCAGATGACTTCTCATATTCTTTCAAAGTTCAATATCTTCCACCTATTGTTTTGACGTGTTTATTACCTAAGTCATACCCAAGCCATCGACCACCTATTTTTACAATCTCTGTTAAGTGGTTGGAACCGGTCAAGATTCTGAGTCTGTGCTCCGAGTTGGATTCAATATGGGCCGAACAACAGGGGCTGGAAGTAATTTACCCTTGGGTAGAATGGTTACATAGTTCTTCTCTTTCTCATCTGGGATTTGATAAGGAAATTACACTTGGTCCTTATGGCATGAATCATCTTGGGGATGAGCGCGTTATTTCTGGAGCTGGGTGCATTGAAGTTGACATTCCATTTTTACGAAGTTACAATGATGAGAGACACCATGAATACTTCCTCAACGAATTGCACGAATGTAGCATTTGCTTTAGTGAATATCCAGGTACTGAGTTTATCCGGTTACCATGTAAGCACTTTTTTTGCCTCAAATGCTTGCAAACCTTTACTCAGATACATATAAAGGAAGGCACCGTTAGTAATCTTCAATGTCCTGATGCAAAATGTAAGGTTATGATTCCACCTGGCCTTTTAAAACACTTGCTGGGTGATGAAGATCGTGAACGCTGGGAATCCATGATGTTGGAGAAAGCACTTGCATCAATGTCTGATGTTGTTTATTGCCCAAGATGTGAAACACCTTGTATAGAGGATGAAGACCAGCATGCTCAATGCCCAAAATGTTATTTTAGCTTTTGTACTCTATGCAGGGAACGACGCCATGTTGGCATAGCCTGCATGACCCTAGATATGAAGATTCAGATTTTGCAGGATCGTCAAAATTCATCACAACTAAAGGAAGACCAGAAGCGTAGGGAACGTGAAAAAATTAATGAAATGCTCAGTATGAAAGAAATTCATCGTGATTCCAAGCTGTGCCCTTCTTGTGACATGGCAATTTCGCGAACTGAAGGTTGTAACAAAATGACATGTGGTAATTGTGGACAATACTTCTGTTACCGCTGCAACAGAGCAATTGATGCATCAGATCCATATGGACATTTCAGGGATGGTTCGTGTGAATTGTTCCCTCAAGAAATGGTTGAGTCCTGGCAAGAGCGCATAAATCATCGCCAGGCTGTAGGACAATTACAGGCAGAGATCTTTCCTCAACGTGGCTCAGCATGTCCTAATTGTCGTCAATTTAATGCAAAGATTGGAAACAATAATCACATGTTTTGCTGGGCATGCCAAAGCCATTACTGCTACTTGTGCAACGAGACTGTTAGGCGCGGCACCAAGCATTATGGACCAAAGGGCTGCAAACAGCACACCGAGGGATAG 1821 0.4206 MRRSRGKQHCAAEEPSSNSHSVTLGEGVNVNITDTVMPQDHGKGESDVSELNIIGDVTGETDRGCSSIKTKEGDGEIDFNARLDKLLNNIEEPELSEEETRINDQLQQDEILVVESIYGEDVFSLERWKGLHCFQIHIHIDVLGEIAITAKLNSSNEHDIVSSNSDDFSYSFKVQYLPPIVLTCLLPKSYPSHRPPIFTISVKWLEPVKILSLCSELDSIWAEQQGLEVIYPWVEWLHSSSLSHLGFDKEITLGPYGMNHLGDERVISGAGCIEVDIPFLRSYNDERHHEYFLNELHECSICFSEYPGTEFIRLPCKHFFCLKCLQTFTQIHIKEGTVSNLQCPDAKCKVMIPPGLLKHLLGDEDRERWESMMLEKALASMSDVVYCPRCETPCIEDEDQHAQCPKCYFSFCTLCRERRHVGIACMTLDMKIQILQDRQNSSQLKEDQKRREREKINEMLSMKEIHRDSKLCPSCDMAISRTEGCNKMTCGNCGQYFCYRCNRAIDASDPYGHFRDGSCELFPQEMVESWQERINHRQAVGQLQAEIFPQRGSACPNCRQFNAKIGNNNHMFCWACQSHYCYLCNETVRRGTKHYGPKGCKQHTEG* 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g1766 606 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 85 546 IPR031127 GO:0004842|GO:0016567
Apr7g1766 606 SUPERFAMILY RING/U-box 294 381 - -
Apr7g1766 606 SUPERFAMILY RING/U-box 552 603 - -
Apr7g1766 606 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 85 546 - -
Apr7g1766 606 Pfam zinc-RING finger domain 298 345 IPR001841 -
Apr7g1766 606 SMART ibrneu5 367 425 IPR002867 -
Apr7g1766 606 SMART ibrneu5 454 519 IPR002867 -
Apr7g1766 606 SUPERFAMILY UBC-like 103 239 IPR016135 -
Apr7g1766 606 SUPERFAMILY RING/U-box 458 514 - -
Apr7g1766 606 MobiDBLite consensus disorder prediction 11 27 - -
Apr7g1766 606 SMART ring_2 472 501 IPR001841 -
Apr7g1766 606 SMART ring_2 299 346 IPR001841 -
Apr7g1766 606 SMART ring_2 555 584 IPR001841 -
Apr7g1766 606 Gene3D - 440 547 - -
Apr7g1766 606 Pfam RWD domain 105 239 IPR006575 GO:0005515
Apr7g1766 606 ProSiteProfiles Zinc finger RING-type profile. 299 347 IPR001841 -
Apr7g1766 606 ProSiteProfiles RWD domain profile. 109 244 IPR006575 GO:0005515
Apr7g1766 606 SMART RWD2001b 109 244 IPR006575 GO:0005515
Apr7g1766 606 ProSitePatterns Zinc finger RING-type signature. 316 325 IPR017907 -
Apr7g1766 606 ProSiteProfiles TRIAD supradomain profile. 295 524 IPR044066 -
Apr7g1766 606 SUPERFAMILY RING/U-box 367 429 - -
Apr7g1766 606 Gene3D Ubiquitin Conjugating Enzyme 96 246 IPR016135 -
Apr7g1766 606 Pfam IBR domain, a half RING-finger domain 462 505 IPR002867 -
Apr7g1766 606 Pfam IBR domain, a half RING-finger domain 367 425 IPR002867 -
Apr7g1766 606 MobiDBLite consensus disorder prediction 1 27 - -
Apr7g1766 606 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 294 382 IPR013083 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g1766 262 527 ARIADNE family AT3G27710 25.275 1.41e-17 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g1766 K11971 - gmx:100500662 1001.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g1766 7 24967733 24973061 Apr7g1766 7 24967733 24973061 ECH