Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g1759 ATGGGCAAGAAGAAACCCAAGGATCCGCAACAAACTACCCAAACCGACGACGTTTCATCCCCTTCCAGCATTTTCAACAAGCTCTTCGGCAACGCGCCGGAACAGTCCACCGCAACCCCCGCCGCTTCTCTATTTTCCGATGACAACCCCTTTCGTAGAAAGCCTCCACAACCTGCTCCGGCTTCCAACTCAACCAATCACACTCTGAGCCCTAACAACGTTGTCTCTGGGAACCGCGATTCCAGCGACGAGAAAAAGAGGAAAAGGAAAAAGGAGAAAAACCCCATCTTCGATTCCGATTCCGTTGTCGACGTGTCGGAGAAGAAGAGGAAACAAGGTTTCGATGAAAGGGTAGGGGAAGGGGAAAAAAAGCTTAATGTGGGTGCGGGAGAAATTGAGAAGGGCAAGGAGGGGAAGAAAAAGAGGAAAAGGGATGAACTTGAGAAAGAGTGGGAGGAAAGGAAGTATGGGCCAGTGGAGGGAGGGGAGGAATTTGAAAAGGAAAAAATTGGGAGTAAAACTGTTGGGAGCAAGAGGAAGACTTTGGATAATCCAGCTGATATGTTGGTGTCAAAAGAGGGTTTTGATGATGAGGATAAGCTTTTGAGGACTATTTTTGTTGGGAATTTGCCTCTCAAGGTGAAAAAGAAGACTCTATTGAAGGAGTTTAAGAAATTTGGTGAGGTTGATTCTGTGAGGATCCGTTCTGTTCCAATACAAGATACCAAGAAACCTAGAAAGGGGGCAATCCTTGCGAAGAAAATAAATGATGCTGCTGATAGTGTTCATGCTTACATTGTTTTCAAAACCGAGCAATCTGCTCAGGCTTCTTTGTCCCACAACATGACGATGGTTGAAGGAAATCACATTCGTGTTGATAGGGCATGCCCACCCCGCAAAAAGCATAAAGGGGAGAGTGCTCCACTTTATGATAGTAAGAGAACTGTTTTTGTGGGCAACCTTCCATTTGATGTGAAGGATGAAGAGCTTTATCAGTTATTTTGTGGTATATCCAATCTGGAATCAAGTATAGAAGCTGTTAGAGTTGTTCGAGATCCTCATCTTAATGTTGGGAAGGGCATTGCCTATGTGCTGTTTAAAACAAGGGAAGCCGCTAAATTTCTTGTTAAGAAACGGAACTTGAAGCTTCGAGACCGAGAATTGAGGCTTTGTCATGCCAAAGCTGATGCTACCCCATCTAAGAGGCCCAGTCATGCCAAAGCTGATGCTACCCAATCTAAGAGGCCCAGTCATGCCAAAGCTGATGCTACCCAATCTAAGAGGCCCAACTCATTGCCAACGGAAACTCCACCTGCAAAGAAGTTGTCTGTGGATCCTAGGTCTCCTTCAAGCAGTAAGAACAACTCAAACAGAAAAACTAATGCTTCTTATCAGGGTCTGCGTGCAAGTAAATCCAACGTCCCCAAGAAAATTCCTGGAGGAGAAAAACCAAAAGAGCGCAATATGAAAAGACCAGCAGTAGCTGCCAGAAAGGTTAAAGCAAAGTCGGTGAAGGAGAGTGGTCTACCAAAACAAGCAGGGGTAAAACGCAAGCTTGATAATCGTACTCCCAATAGCTCCTTACGAAATAAGAAAGCCAGAAAGAACAGGTAG 1614 0.4517 MGKKKPKDPQQTTQTDDVSSPSSIFNKLFGNAPEQSTATPAASLFSDDNPFRRKPPQPAPASNSTNHTLSPNNVVSGNRDSSDEKKRKRKKEKNPIFDSDSVVDVSEKKRKQGFDERVGEGEKKLNVGAGEIEKGKEGKKKRKRDELEKEWEERKYGPVEGGEEFEKEKIGSKTVGSKRKTLDNPADMLVSKEGFDDEDKLLRTIFVGNLPLKVKKKTLLKEFKKFGEVDSVRIRSVPIQDTKKPRKGAILAKKINDAADSVHAYIVFKTEQSAQASLSHNMTMVEGNHIRVDRACPPRKKHKGESAPLYDSKRTVFVGNLPFDVKDEELYQLFCGISNLESSIEAVRVVRDPHLNVGKGIAYVLFKTREAAKFLVKKRNLKLRDRELRLCHAKADATPSKRPSHAKADATQSKRPSHAKADATQSKRPNSLPTETPPAKKLSVDPRSPSSSKNNSNRKTNASYQGLRASKSNVPKKIPGGEKPKERNMKRPAVAARKVKAKSVKESGLPKQAGVKRKLDNRTPNSSLRNKKARKNR* 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g1759 537 MobiDBLite consensus disorder prediction 445 470 - -
Apr7g1759 537 MobiDBLite consensus disorder prediction 394 422 - -
Apr7g1759 537 CDD RRM2_RBM34 315 390 IPR034221 -
Apr7g1759 537 Gene3D - 199 302 IPR012677 -
Apr7g1759 537 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 314 395 IPR000504 GO:0003723
Apr7g1759 537 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 203 297 IPR000504 GO:0003723
Apr7g1759 537 SMART rrm1_1 204 293 IPR000504 GO:0003723
Apr7g1759 537 SMART rrm1_1 315 391 IPR000504 GO:0003723
Apr7g1759 537 MobiDBLite consensus disorder prediction 423 437 - -
Apr7g1759 537 MobiDBLite consensus disorder prediction 1 171 - -
Apr7g1759 537 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 46 535 - -
Apr7g1759 537 MobiDBLite consensus disorder prediction 79 171 - -
Apr7g1759 537 MobiDBLite consensus disorder prediction 58 78 - -
Apr7g1759 537 CDD RRM1_RBM34 203 293 IPR034220 -
Apr7g1759 537 SUPERFAMILY RNA-binding domain, RBD 307 403 IPR035979 GO:0003676
Apr7g1759 537 MobiDBLite consensus disorder prediction 394 537 - -
Apr7g1759 537 MobiDBLite consensus disorder prediction 478 527 - -
Apr7g1759 537 MobiDBLite consensus disorder prediction 12 44 - -
Apr7g1759 537 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 205 247 IPR000504 GO:0003723
Apr7g1759 537 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 316 388 IPR000504 GO:0003723
Apr7g1759 537 PANTHER RNA-BINDING PROTEIN 34 46 535 - -
Apr7g1759 537 Gene3D - 303 419 IPR012677 -
Apr7g1759 537 SUPERFAMILY RNA-binding domain, RBD 196 303 IPR035979 GO:0003676
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g1759 205 394 Eukaryotic Initiation Factors Gene Family AT1G22760 25.000 5.07e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g1759 K14837 - gmx:100784494 657.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g1759 7 24886831 24890866 Apr7g1759 7 24886831 24890866 ECH