Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g1756 ATGATTTTTCCTCTGCATGATTTTCCCCCTACACCTTGCTTCTGCTTAAACTTCTCTCATCCATGCAAAGAACCAACCATGTCTTTGACAAAAGCAGAAAATTCTGAAACCTCATCACCGCCACAACAAGCACTAGTACCACCCACATCATACACTTCCCCACCAGCGCTAATAGCATGTACACTCGCTGTTGTTCTCGTTTGCTTCATAGGTTTCACCATTGTCTACTTCTGCAGATGTTGTTTTGTGAACATGGTAAACGCTTGGGCCTTTCAACGCTCAGCTTCAGGAACCCTTATTCGTCTTTCTCCCAATGCTGCTTCTCCTTACACAGGCCTTGACCCTTCTCTTCTTCAAACATTCCCCACCTTCCTCTATGCCACAGTGAAGAATCTTCGCAAGGAAAAGAAGTATTCCCTTGAATGTGCCATTTGCTTGGTCGAGTTCGAAGATGATAGCATGCTACGACTCTTAACCATTTGTTACCATGTTTTTCATCAAGAATGCATCGACCTTTGGCTTCGATCCAACAAGACATGCCCCGTTTGTCGCACGGATCTTGATTCACCGACCGAAGAAACGCAAAAACCCGTGGAACAAGTTGAGGAGAATCTTAACGTGGAAGAAGAGAGAAGGAATCACGTGTGCGCTGGTGTAAAAGAAGGCGATGGAGATGAGAGACGTCATGATGATGCTAATGTGGCAGTTTCGGTGAGTGGGAGCATGCAACAACGTGGGGAAGAGAAGTTTGTAAGGTCACACACGACTGGGCATTCTATAGTTATGATTAGAGAAGATGAAGATAGAGATAATGATGATAAATATACGTTGAGATTGCCGGAAAATGTAGAGTTGAAAATTGAAAGGAGAGGGCACAACTACTCCAAGAGTTGTTCTAATCATAAGGATATGGCAAAGCTTGCTGCGCCTTGTAATAGTGATTCTGGTCATGTTCAAATTCTATTTGGATGCTCTTCCTGTAGTGGTAATGAAAATGTTTAA 1002 0.4341 MIFPLHDFPPTPCFCLNFSHPCKEPTMSLTKAENSETSSPPQQALVPPTSYTSPPALIACTLAVVLVCFIGFTIVYFCRCCFVNMVNAWAFQRSASGTLIRLSPNAASPYTGLDPSLLQTFPTFLYATVKNLRKEKKYSLECAICLVEFEDDSMLRLLTICYHVFHQECIDLWLRSNKTCPVCRTDLDSPTEETQKPVEQVEENLNVEEERRNHVCAGVKEGDGDERRHDDANVAVSVSGSMQQRGEEKFVRSHTTGHSIVMIREDEDRDNDDKYTLRLPENVELKIERRGHNYSKSCSNHKDMAKLAAPCNSDSGHVQILFGCSSCSGNENV* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g1756 333 CDD RING-H2_EL5_like 141 184 - -
Apr7g1756 333 SMART ringv_2 141 184 IPR011016 GO:0008270
Apr7g1756 333 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 105 191 IPR013083 -
Apr7g1756 333 PANTHER RING FINGER DOMAIN-CONTAINING 39 305 - -
Apr7g1756 333 Pfam Ring finger domain 141 184 IPR001841 -
Apr7g1756 333 SUPERFAMILY RING/U-box 134 191 - -
Apr7g1756 333 SMART ring_2 142 183 IPR001841 -
Apr7g1756 333 PANTHER RING-H2 FINGER PROTEIN ATL29 39 305 - -
Apr7g1756 333 ProSiteProfiles Zinc finger RING-type profile. 142 184 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g1756 Apr-Chr7 24859865 24861397 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g1756 53 287 Rapid Response to Elicitors AT3G05200 40.164 5.55e-37 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g1756 - - ccaj:109800443 358.221
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g1756 7 24859865 24861397 Apr3g0647 3 16448689 16449573 PCT