Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g1754 ATGGCAACTTTAGAATTAGCTCTCACAGTGTTCGCACCTCAACGACTTTCCCATAACTATGGTTTCCATGCAAAGGCACCACAGTCAATTAAGCTCAACACTTCCATTCCTTTCTCTTCCCTTGTCTTCTCCTCCAAAACCCCAACACTCTGCTTCCACTTATGCTCTGCTTTGCAAGAGGTAGCAGCAACAGAGGAAACACAAGACCAAACCCAACTAACAAACAACGTCAAGAAGAAACTCTACGTTGTTAACTTACCTTGGTCTATGTCCGCCTCAGACATCAAAGATCTCTTTGCCCAATGCGGAAATGTAACCGACGTCGAGATAATAAAGAACAAAGATGGGAGGAGCAGAGGCTATGCTTTCGTTACCATGGCTTCCGGTGAAGAAGCTTTGGCTGCTGTTGATAAATTTGACTCTCAGGAAATATCAGGACGGATAATAAGGGTAGAACTTGCGAAGAGATTCAAGAAACCTCCTTCACCACGTCCACCAGGTCCTCGTCCTGGAGAGGCACGACATGTACTTTATGCATCCAACCTTGCATGGAAAGCAAGATCTATCCATCTCAAACAAGTCTTCACTGAAAATTTCAAAACACCAGTTTCAGCTAGGGTTGTCTTTGACAGCCCATCTGGAAGATCTGCTGGGTATGGATTTGTTTCTTTTCTTACAAGGGAGGAAGCAGAGGCTGCTATTTCTGCTTTGGATGGGAAGGACTTAATGGGACGACCATTACGTCTAAAATTTAGTGAAAAGAAAGTTGAAGAAGCTGGAAGTGAAAAAGATGAAGACCAAGGTTCTGAAGATCAAATTGAAGAAGCTGAAAGTGATGAAGATGAAGACCAAGGTCATGATGACGCTCAACTGGAATAA 879 0.4346 MATLELALTVFAPQRLSHNYGFHAKAPQSIKLNTSIPFSSLVFSSKTPTLCFHLCSALQEVAATEETQDQTQLTNNVKKKLYVVNLPWSMSASDIKDLFAQCGNVTDVEIIKNKDGRSRGYAFVTMASGEEALAAVDKFDSQEISGRIIRVELAKRFKKPPSPRPPGPRPGEARHVLYASNLAWKARSIHLKQVFTENFKTPVSARVVFDSPSGRSAGYGFVSFLTREEAEAAISALDGKDLMGRPLRLKFSEKKVEEAGSEKDEDQGSEDQIEEAESDEDEDQGHDDAQLE* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g1754 292 MobiDBLite consensus disorder prediction 252 292 - -
Apr7g1754 292 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 81 149 IPR000504 GO:0003723
Apr7g1754 292 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 178 248 IPR000504 GO:0003723
Apr7g1754 292 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 79 156 IPR000504 GO:0003723
Apr7g1754 292 SUPERFAMILY RNA-binding domain, RBD 74 166 IPR035979 GO:0003676
Apr7g1754 292 PANTHER CHLOROPLAST, PUTATIVE-RELATED 24 272 - -
Apr7g1754 292 SUPERFAMILY RNA-binding domain, RBD 161 257 IPR035979 GO:0003676
Apr7g1754 292 PANTHER OS02G0815200 PROTEIN 24 272 - -
Apr7g1754 292 MobiDBLite consensus disorder prediction 263 292 - -
Apr7g1754 292 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 175 254 IPR000504 GO:0003723
Apr7g1754 292 Gene3D - 172 290 IPR012677 -
Apr7g1754 292 Gene3D - 57 171 IPR012677 -
Apr7g1754 292 SMART rrm1_1 80 152 IPR000504 GO:0003723
Apr7g1754 292 SMART rrm1_1 176 250 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g1754 Apr-Chr7 24847484 24851502 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g1754 81 257 Eukaryotic Initiation Factors Gene Family AT4G34110 25.967 9.97e-12 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g1754 - - gmx:100793319 377.481
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g1754 7 24847484 24851502 Apr7g1754 7 24847484 24851502 ECH