Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g1723 ATGGGAAGAGGGAAGATTGTGATTGAAAGGATCGACAATTCCACTAGCCGCCAAGTGACTTTCTCTAAGAGGAGAAAGGGTTTGATCAAGAAAGCCAAAGAGCTTGCAATCCTCTGTGATGCTCAAGTTGGAGTTGTCATATTCTCCAGCACAGGAAAGCTTTACGAATATGCAAGCACCAGCATGAAATCAATGATCGAGAGATATAACACATGCAAGGAGGAAGATCAATTGACAAATTCAGAACCGGGAGTCAAGTTTTGGCAGAGGGAGGCAGAATTTCTAAGGCAGCAACTACAGAATCTACAAGAAAACCATCGGCAATTGATGGGAGAACAACTTTATGGTTTGAGTGTCAGAAACCTACAAGATCTGGAGAATCAACTGGAAATGAGTCTCCAAGGGGTTCGCATGAAAAAGGAGCAAATTCTAAGAGACGAAATCCAAGAGCTGAACCGAAAGGGAAACCTAATCTATCAAGAAAATGTGGAACTTTACAAGAAGGTTTATGGTACAGCAGATATGGCTGCAACAAGCAGAAATGCATTTGTTCCACTTCCATATGCTATACATGCAGGAGGGCATCCACAAGAATTGATTCAACTTCAGTTATTGCAGCCTGAGCAAGAAGCTTGTGAGACATCAGGCAGTGCCACAAAATGA 663 0.4238 MGRGKIVIERIDNSTSRQVTFSKRRKGLIKKAKELAILCDAQVGVVIFSSTGKLYEYASTSMKSMIERYNTCKEEDQLTNSEPGVKFWQREAEFLRQQLQNLQENHRQLMGEQLYGLSVRNLQDLENQLEMSLQGVRMKKEQILRDEIQELNRKGNLIYQENVELYKKVYGTADMAATSRNAFVPLPYAIHAGGHPQELIQLQLLQPEQEACETSGSATK* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g1723 220 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Apr7g1723 220 Gene3D - 13 93 IPR036879 GO:0003677|GO:0046983
Apr7g1723 220 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Apr7g1723 220 PANTHER MADS-BOX TRANSCRIPTION FACTOR 23 ISOFORM X1 1 219 - -
Apr7g1723 220 Coils Coil 122 142 - -
Apr7g1723 220 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Apr7g1723 220 Pfam K-box region 85 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Apr7g1723 220 SUPERFAMILY SRF-like 2 82 IPR036879 GO:0003677|GO:0046983
Apr7g1723 220 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Apr7g1723 220 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Apr7g1723 220 Coils Coil 85 112 - -
Apr7g1723 220 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Apr7g1723 220 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Apr7g1723 220 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Apr7g1723 220 ProSiteProfiles K-box domain profile. 85 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Apr7g1723 220 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g1723 Apr-Chr7 24465179 24474557 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g1723 1 218 MADS-box Gene Family AT2G22630 59.227 3.48e-89 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Apr7g1723 K-box 8.3e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g1723 K09264 - gmx:100795778 364.77