Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g1719 ATGATGGTGGGAGTTCAAGTGACGAACAGGGTTTCCTTCATGTGGTGGTTTAGAATGGCTGTGCAACTTGGCTTAATCTTGCTCGGTGCTTGTTCTGAGAAGACCTCATTTAGAAGAGACTTAAGGGGGATCGACAATCTAGCATCGACGTCTGCTCCTGTGAACCTAAACACACAAAATCCTCACCAGGTGGTGATTGGCAACGGCATCGTTTCCCTTCATTTATCAAGGCCCGAGGGCGATATCCTTGGAATATCATATGCTGGAATTGACAATGTACTCGAAGCTAAAAATAAAGAAGGCGATAGAGGGTACATGGACGTTGTTTGGAAACAACCAGGACAACGTGACACGTTTCAGAGAGTCCTAGGGACAAATTTCAGAGTCATAACAGCAAACGAGAACATAGCGGAGGTTTCATTTTTAAGAACATGGACAGCTTCCATGAAAGGCTCAAGTGTCCCCGTAAACATAGACAAAAGGTATATATTGCGACGAGGCGATTCCGGGTTTTATTCATATGTAATATTTGAGCGACCAGCAGGATTACCTGCGGTGGTGATTGATCAAATTAGGCTTGTTTTCAAACTCAACGAAGACAGGTTCCACTATATGGCTATATCAGATACTAGGAGAAGGGAAATGCCATCTGTGAGAGATAGAGAAACGGGTCAGCCCCTAGCTTATCCGGAAGCTATTCTCTTAACCCGTTCATCAAACCCAAAATTCAGGGGAGAGGTGGATGACAAATACCAATACTCGATTGAGAACAAAGATAACTTAGTTCATGGTTGGATTACCAATGAGTCTGAAGTCTCAGTGGGTTTCTGGATGATAACGCCCAGTAATGAGTTCCGCAACGCTGGGCCCATTAAGCAAGATCTAACCTCTCATGTTGGGCCCACTACTCTCTCCATGTTTGTGAGCACACACTATGCTGGCGAGGAGGTAACCATGGCCTTTCAAGAAGGGGAGACTTATAAAAAGGTTTTTGGCCCAGTTTTTTCCTACCTCAACTCTGCTCCAAATAAAGCTGAGTTTCTGTCTCTTTGGTCAGATGCTGTTGAACAGCTATCCAATGAAGTCAGAAAATGGCCTTATGATTTCCCTCAATCAAAAGATTACCTTCCACCCAATCAACGGGGAACAGTAGCTGGACGGTTACAAGTCCAAGAGGGAAAGAAATCTCAATATGCTATTGATGCTTATGTTGGTCTAGCTTTGCCTGGAGAAGCAGGATCGTGGCAAAAAGAAAGCAAGGGTTATCAATTCTGGACTCAAACTGACAGATCCGGACACTTTGTAATAAAAAATATTGTACCTGGGGATTACAACCTGTATGCATGGGTTCCTGGCTTTATTGGAGATTACATGTATAAAGCTAAAATCACTGTCACACCAGGAAGCAACATCAACTTGGATTCACTTGTATATAGTCCTCCAAGAAATGGTCCTACTTTGTGGGAAATTGGGGTCCCAGATCGCTCAGCTGGGGAATTCCATGTACCAGATCCTTACCCCACGCTATTGAACAAACTATACACGAACGATGCAAAAAACAAGTTTAGGCAATACGGGTTGTGGGAACGTTACACTGATTTATATCCAAATCGTGATCTCGTTTTCACGGCTGGCGTTGATGACTATAAAAAGGTTTGGTTTTTTGCTCATGTTACCAGGAGCATAGCAAATAATACATTCCAGCCAACCACATGGCAGATTAAATTCGATCTTCAAAATAACATATTGAGAGGCAACTACACACTACAATTGGCCCTGGCATCTGCCACTAATGCTGAATTGGAGGTTTGGTTGAATGACCCAAGAGCTAAATCTCCCCTCTTCACAGCAGGGCGTTTAGGAGAAGACAATGCCATAGCAAGGCACGGCATCCATGGATTGCATAGGCTGTATAGTATAGTTGTAGATAGTAATCATTTGGTAAATGGAAAGAACACCATCTATCTGAGACAGTCAAAAGCCACAGGTCCGTTCCAAGGAGTTATGTATGATTATATCCGCTTAGAAAGTCCTCCAACTCAAGCTACTTGA 2052 0.4332 MMVGVQVTNRVSFMWWFRMAVQLGLILLGACSEKTSFRRDLRGIDNLASTSAPVNLNTQNPHQVVIGNGIVSLHLSRPEGDILGISYAGIDNVLEAKNKEGDRGYMDVVWKQPGQRDTFQRVLGTNFRVITANENIAEVSFLRTWTASMKGSSVPVNIDKRYILRRGDSGFYSYVIFERPAGLPAVVIDQIRLVFKLNEDRFHYMAISDTRRREMPSVRDRETGQPLAYPEAILLTRSSNPKFRGEVDDKYQYSIENKDNLVHGWITNESEVSVGFWMITPSNEFRNAGPIKQDLTSHVGPTTLSMFVSTHYAGEEVTMAFQEGETYKKVFGPVFSYLNSAPNKAEFLSLWSDAVEQLSNEVRKWPYDFPQSKDYLPPNQRGTVAGRLQVQEGKKSQYAIDAYVGLALPGEAGSWQKESKGYQFWTQTDRSGHFVIKNIVPGDYNLYAWVPGFIGDYMYKAKITVTPGSNINLDSLVYSPPRNGPTLWEIGVPDRSAGEFHVPDPYPTLLNKLYTNDAKNKFRQYGLWERYTDLYPNRDLVFTAGVDDYKKVWFFAHVTRSIANNTFQPTTWQIKFDLQNNILRGNYTLQLALASATNAELEVWLNDPRAKSPLFTAGRLGEDNAIARHGIHGLHRLYSIVVDSNHLVNGKNTIYLRQSKATGPFQGVMYDYIRLESPPTQAT* 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g1719 683 Gene3D - 55 345 IPR014718 GO:0030246
Apr7g1719 683 SUPERFAMILY Starch-binding domain-like 375 475 IPR013784 GO:0030246
Apr7g1719 683 SUPERFAMILY Galactose-binding domain-like 483 676 IPR008979 -
Apr7g1719 683 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 58 680 - -
Apr7g1719 683 CDD RGL4_N 63 345 - -
Apr7g1719 683 Gene3D - 484 676 - -
Apr7g1719 683 SUPERFAMILY Galactose mutarotase-like 58 341 IPR011013 GO:0003824|GO:0005975|GO:0030246
Apr7g1719 683 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 58 680 - -
Apr7g1719 683 Pfam Polysaccharide lyase family 4, domain III 486 675 IPR029411 -
Apr7g1719 683 Pfam Rhamnogalacturonate lyase family 48 247 IPR010325 -
Apr7g1719 683 CDD RGL4_C 488 676 - -
Apr7g1719 683 CDD RGL4_M 380 476 IPR029413 -
Apr7g1719 683 Pfam Polysaccharide lyase family 4, domain II 402 473 IPR029413 -
Apr7g1719 683 Gene3D - 376 475 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g1719 Apr-Chr7 24424751 24432652 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g1719 50 680 Polysaccharide Lyase AT1G09910 53.616 0.0 693
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g1719 K18195 - gmx:100801633 1030.39