Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g1703 ATGGCTCCTGCCACTAACTGGCTGTCGTTTTCGCTCTCTCCCATGGAAATGCTCAGAAACCCCGAACCACAGTTTGTTCAATACGACGCCGCCGCTTCCGCTTCTTCCTCCTCTCATAACTATTTTCTCGATAATTTGTACTCCAATGGGTGGGGGAACCCCAAGTCTCAGGTTCTGCTGGAGCAGAATCTAAACCATAGCAACGTGAGTTTCATGGAATCGGCGCAGACTCAGAGTGTTAGCCACGCGCCTCCGCCGAAGCTGGAGGACTTTCTCGGGGACTCTTCCGCCGTGATGCGATACTCCGATAGTCAGACGGAGACGCAAGACTCGTCGTTGACTCACATGTACGACCACCATGGCTCTGCTTACTTCGGTGACCAGCAGGATCTTAAGGCCATTGCTGGATTTCAAGCTTTTTCGACTAACTCTGGTTCAGAGGTTGATGACTCTGCCTCCATCGGAAAGGCGCATCCCAACGAGTTCGGGACTCACTCTATTGAGTCCTCCGGGAACGAGTTCGCCGCGTTCTCCGGTCCCACCACCGGAGCCTTGTCTCTCGGGGTTGCGCAGAGCTCTGAGAAGGCCGTGGTTGCGGCAGATTCCGATAGCTCGAAGAAGATAGTTGATACCTTTGGCCAGCGGACTTCAATTTACAGAGGCGTTACTAGGCACCGATGGACAGGTAGATATGAAGCGCATCTATGGGACAACAGCTGTAGAAGAGAGGGTCAAGCCAGGAAAGGGCGTCAAGGAGGATATGATAAGGAAGAGAAGGCAGCGAGAGCTTATGATTTGGCAGCTCTAAAGTACTGGGGTCCCACCGCTACCACCAACTTCCCTGTTTCCAATTATACAAAGGAGTTGGAGGAGATGAAACATGTAACAAAGCAAGAATTCATTGCATCACTGCGAAGGAAAAGTAGCGGTTTTTCCAGGGGAGCTTCCATTTACAGAGGTGTTACAAGGCACCATCAACAGGGTAGATGGCAAGCAAGAATTGGCCGGGTTGCTGGAAACAAAGATCTGTACTTGGGAACATTCGCTTCTGATGAGCAAGCAGAAGACGCATACGATATTGCAGCTATAAAGTTTAGAGGTGCAAACGCCGTAACCAATTTTGAGATGAGTAGATATGATGTGGAAGCAATAATGAAGAGTTCTCTCCCAGTTGGTGGGGCAGCAAAACGCTTGAAACTTTCCTTAGAATCAGAGCAGAAAGCTCCACTGAGCAACAGTCAACAAAACCCTCACTGTGCAAACATGAGTGGCAGCATCAATTTCTCAGCCATTCAGCCAGTTACTACTATCCCTTGTGGAATTCCCTTTGATTCCACAACCGCGTATTATCATCACAATCTCTTCCAACATTTTCATCCCACCAATGCTGGCACGGCAGAGTCTGTAGTTACTCCAACCAATGGAACTGGACTCACTGCTCTGCCACCGCCACCAGCAGCAGCTGAGTTCTTTATTTGGCCTCATCATCAGTCTTATTGA 1500 0.496 MAPATNWLSFSLSPMEMLRNPEPQFVQYDAAASASSSSHNYFLDNLYSNGWGNPKSQVLLEQNLNHSNVSFMESAQTQSVSHAPPPKLEDFLGDSSAVMRYSDSQTETQDSSLTHMYDHHGSAYFGDQQDLKAIAGFQAFSTNSGSEVDDSASIGKAHPNEFGTHSIESSGNEFAAFSGPTTGALSLGVAQSSEKAVVAADSDSSKKIVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQGGYDKEEKAARAYDLAALKYWGPTATTNFPVSNYTKELEEMKHVTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFASDEQAEDAYDIAAIKFRGANAVTNFEMSRYDVEAIMKSSLPVGGAAKRLKLSLESEQKAPLSNSQQNPHCANMSGSINFSAIQPVTTIPCGIPFDSTTAYYHHNLFQHFHPTNAGTAESVVTPTNGTGLTALPPPPAAAEFFIWPHHQSY* 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g1703 499 CDD AP2 316 377 IPR001471 GO:0003700|GO:0006355
Apr7g1703 499 SUPERFAMILY DNA-binding domain 316 377 IPR016177 GO:0003677
Apr7g1703 499 Gene3D AP2/ERF domain 218 283 IPR036955 GO:0003700|GO:0006355
Apr7g1703 499 Gene3D AP2/ERF domain 317 377 IPR036955 GO:0003700|GO:0006355
Apr7g1703 499 ProSiteProfiles AP2/ERF domain profile. 317 375 IPR001471 GO:0003700|GO:0006355
Apr7g1703 499 ProSiteProfiles AP2/ERF domain profile. 218 281 IPR001471 GO:0003700|GO:0006355
Apr7g1703 499 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR AIL6 5 495 - -
Apr7g1703 499 SMART rav1_2 218 287 IPR001471 GO:0003700|GO:0006355
Apr7g1703 499 SMART rav1_2 317 381 IPR001471 GO:0003700|GO:0006355
Apr7g1703 499 CDD AP2 217 283 IPR001471 GO:0003700|GO:0006355
Apr7g1703 499 Pfam AP2 domain 218 273 IPR001471 GO:0003700|GO:0006355
Apr7g1703 499 Pfam AP2 domain 317 367 IPR001471 GO:0003700|GO:0006355
Apr7g1703 499 PRINTS Ethylene responsive element binding protein signature 219 230 IPR001471 GO:0003700|GO:0006355
Apr7g1703 499 PRINTS Ethylene responsive element binding protein signature 357 377 IPR001471 GO:0003700|GO:0006355
Apr7g1703 499 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 5 495 - -
Apr7g1703 499 SUPERFAMILY DNA-binding domain 217 283 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g1703 Apr-Chr7 24285389 24289642 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g1703 41 499 AP2-EREBP Transcription Factor Family AT5G10510 55.254 2.48e-171 492
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Apr7g1703 AP2 1.8e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g1703 K09285 - gmx:100777168 805.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g1703 7 24285389 24289642 Apr3g0723 3 18926841 18930926 PCT