Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g1680 ATGGACGAAGCACTCAGGCGTCTCAACGGTTCCGCCCCGATTCCCGAACCCAACCCACAAGACCCATCGATCGCCGACAACCAGAAGCGTTGCACCGCCGCCAACAAGAGGACTTTACGCGAAAATAACCCCGCCGGAGCCATGAGGTACCGCGGCGTGAGGCGCAGGCCCTGGGGCCGTTACGCCGCCGAGATAAGGGACCCACAGTCGAAGGAGCGGCGCTGGCTCGGCACCTTCGACACGGCTGAGGAAGCGGCTTGCGCCTATGACTGCGCCGCCAGAGCTATGCGTGGGCTCAAGGCTCGCACGAACTTCGTGTACCCGACTTCCCCTCCTCACCCTTCTTCTGCCACCCAACACTTTTTCCCTTCCTTCAACTTCCCCAAACACGCTCAACAACCTTTCAACAAAATCAACCACCATAACCGCCAGTTGCCGGTTGCTGCCACTCACGGGATTGACCTCGCAGCACCCTACCACCGGAACAACCCTTCCTTCAACATGCTTCTCTTTCGTGACCTTATTAACTCTTCTTCCACCCCTTCTTTGGTTTCTCCTACTAACCAATTCTATGACCAATTCCCCTACAACAACGCTGGTTCTTCTATTTCCTCGTATTCTCCTTCAACACCTACGATTGGTTCTCTCCCAGGTTGTTGTTTGCTGAATCCTTGTGGTGGCAACAGTGTTAATGGTGTTTGTGGCTTTTCTTCCGGGAAGATGAACACTACTCCCACTTGTGGAATTAAAGGAACTGAAGTTGATGATGTTGGATCGGGGTTTTTTCCGAGAGAGTCTTCGGATTCGGGGTTGCTGGAAGAGATAGTTAATGGGTTCTTGCCGAAATCGAAGCCCAATAAATGTGAGGGTGCACTAAAAATGGAGACTTTTTGCAACCCCGAGGAGTTGCTTCCTCCGCTTGTATCTGATTGCACGCTCGTTTCCACCGCTCAGTGTTGTAACGAGACGAAGAAGGGACTTGCCAAGATCGATAGTTTTGGTTTTACTTCTGATCACCAAGGCTTTCCCATGCAAGAATTTGATAGTTTTAATGGGTTTAATACCGTGCAGGCTATGCCTCTTGGGAATGAACAAATCATGATGAATCATGCAGAGAACTCTTTCATTGAAGATATTTTTCAGTACCCAGAGCTTCTTAATGCTTTTGCAGTTAGGATGCAAAATGCGTAG 1191 0.5046 MDEALRRLNGSAPIPEPNPQDPSIADNQKRCTAANKRTLRENNPAGAMRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAACAYDCAARAMRGLKARTNFVYPTSPPHPSSATQHFFPSFNFPKHAQQPFNKINHHNRQLPVAATHGIDLAAPYHRNNPSFNMLLFRDLINSSSTPSLVSPTNQFYDQFPYNNAGSSISSYSPSTPTIGSLPGCCLLNPCGGNSVNGVCGFSSGKMNTTPTCGIKGTEVDDVGSGFFPRESSDSGLLEEIVNGFLPKSKPNKCEGALKMETFCNPEELLPPLVSDCTLVSTAQCCNETKKGLAKIDSFGFTSDHQGFPMQEFDSFNGFNTVQAMPLGNEQIMMNHAENSFIEDIFQYPELLNAFAVRMQNA* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g1680 396 PRINTS Ethylene responsive element binding protein signature 50 61 IPR001471 GO:0003700|GO:0006355
Apr7g1680 396 PRINTS Ethylene responsive element binding protein signature 72 88 IPR001471 GO:0003700|GO:0006355
Apr7g1680 396 Gene3D AP2/ERF domain 48 107 IPR036955 GO:0003700|GO:0006355
Apr7g1680 396 ProSiteProfiles AP2/ERF domain profile. 49 106 IPR001471 GO:0003700|GO:0006355
Apr7g1680 396 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 396 - -
Apr7g1680 396 SUPERFAMILY DNA-binding domain 49 106 IPR016177 GO:0003677
Apr7g1680 396 CDD AP2 49 105 IPR001471 GO:0003700|GO:0006355
Apr7g1680 396 MobiDBLite consensus disorder prediction 1 27 - -
Apr7g1680 396 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ESR2-LIKE 1 396 - -
Apr7g1680 396 Pfam AP2 domain 49 98 IPR001471 GO:0003700|GO:0006355
Apr7g1680 396 SMART rav1_2 49 112 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g1680 Apr-Chr7 23959874 23961064 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g1680 48 282 AP2-EREBP Transcription Factor Family AT1G24590 42.500 1.84e-42 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Apr7g1680 AP2 3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g1680 - - gmx:102669715 434.491