Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g1654 ATGGATGAAATGTACGGAGTGCCGTCGACGGCGGAGTACGCCGACAAGGCCCTGATGACGCCGGAGAATCTGATTTTCCCGCCGGACTACCCCAACTTCTACATGTCATCCTCCGCCGCGGCTCGGATTCCCATGTTCGGATCCGACGAACTCCTCTCCGCTGAGCCTTCCTCCGCGGTCGGAATTCAGCGCCAGGAGGAGGATGACGTGGCCACCACCATCATGAAGGCCAAAATCGCCTCTCACCCTCACTACCCTCGCCTTCTCCAAGCTTACATCGATTGCCAGAAGGTTGGGGCGCCTCCGGAAATCGCGCGTTTGTTGGAGGAAATCCGGCGAGAAAACGACCTGTGCAAGAGGGACGTGGTTTCCACGTGCTTTGGAGCCGATCCCGAGCTCGACGAGTTCATGGAAACCTACTGCGACATGCTCGTGAGGTATAAATCAGACCTTGCTCGCCCTTTCGACGAAGCCACCACCTTCCTCAACAAGATCGAAATGCAGCTCAGCAACCTCTGCACCGGTGCTTCCGTTCCCACCCTTTCTGATGATGGGGGTGTGTCATCGGACGAAGATTTTAGTACCGGAGATGGTGATGCTCAAGATGGACAAATAAAAGGTGAAGATCGTGAGCTCAAGGATAGGCTTTTACGTAAGTTTGGAAGTCACATTGGTTCTTTGAAACATGAGTTTTCTAAGAAGAAAAAGAAGGGTAAGCTTCCTAAGGACGCAAGGCAAATATTGCTTCAGTGGTGGAGTGTCCACTACAAATGGCCTTACCCAACGGAAGCTGATAAGATTGAACTGGCTAAGTCAACAGGGCTAGACCAGAAGCAAATTAACAATTGGTTTATTAATCAAAGAAAACGTCATTGGAAACCATCTGAGAACATGCAGTTCTCTATGATGGAAAATCTTAACGGACGGTTCCTTGCTGATGATTGA 945 0.5069 MDEMYGVPSTAEYADKALMTPENLIFPPDYPNFYMSSSAAARIPMFGSDELLSAEPSSAVGIQRQEEDDVATTIMKAKIASHPHYPRLLQAYIDCQKVGAPPEIARLLEEIRRENDLCKRDVVSTCFGADPELDEFMETYCDMLVRYKSDLARPFDEATTFLNKIEMQLSNLCTGASVPTLSDDGGVSSDEDFSTGDGDAQDGQIKGEDRELKDRLLRKFGSHIGSLKHEFSKKKKKGKLPKDARQILLQWWSVHYKWPYPTEADKIELAKSTGLDQKQINNWFINQRKRHWKPSENMQFSMMENLNGRFLADD* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g1654 314 SUPERFAMILY Homeodomain-like 232 303 IPR009057 -
Apr7g1654 314 Pfam KNOX2 domain 127 173 IPR005541 GO:0003677|GO:0005634
Apr7g1654 314 Gene3D - 228 304 - -
Apr7g1654 314 SMART KNOX2_2 123 174 IPR005541 GO:0003677|GO:0005634
Apr7g1654 314 ProSiteProfiles 'Homeobox' domain profile. 231 294 IPR001356 GO:0003677
Apr7g1654 314 MobiDBLite consensus disorder prediction 182 208 - -
Apr7g1654 314 ProSiteProfiles ELK domain profile. 211 231 IPR005539 GO:0003677
Apr7g1654 314 SMART ELK_2 211 232 IPR005539 GO:0003677
Apr7g1654 314 SMART KNOX1_2 73 117 IPR005540 GO:0003677|GO:0005634
Apr7g1654 314 Pfam ELK domain 211 232 IPR005539 GO:0003677
Apr7g1654 314 CDD homeodomain 243 295 IPR001356 GO:0003677
Apr7g1654 314 Pfam KNOX1 domain 75 116 IPR005540 GO:0003677|GO:0005634
Apr7g1654 314 ProSitePatterns 'Homeobox' domain signature. 269 292 IPR017970 GO:0000981|GO:0006355
Apr7g1654 314 Pfam Homeobox KN domain 251 290 IPR008422 GO:0003677|GO:0006355
Apr7g1654 314 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 6 1 304 - -
Apr7g1654 314 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 304 - -
Apr7g1654 314 SMART HOX_1 233 298 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g1654 Apr-Chr7 23708296 23715398 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g1654 1 314 Homeobox Transcription Factor Family AT1G23380 65.653 1.34e-144 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Apr7g1654 KNOX2 1.7e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g1654 - - gmx:100785764 527.709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g1654 7 23708296 23715398 Apr7g1654 7 23708296 23715398 ECH
Apr7g1654 7 23708296 23715398 Apr7g1654 7 23708296 23715398 PCT