LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr7g1647	ATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATAACCCTTGAGGTGGAGTCTTCGGACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAGGGAATTCCACCGGACCAACAGCGCCTCATCTTCGCCGGAAAACAACTCGAGGATGGTCGTACCCTCGCCGACTACAACATCCAGAAGGAGTCTACGCTCCACCTCGTCCTTCGCCTTCGCGGTGGCGCCAAGAAGAGGAAGAAGAAGACCTACACCAAGCCAAAGAAGATCAAGCACAAGCACAAGAAGGTTAAGCTCGCTATCCTTCAGTTCTACAAGGTCGATGACTCTGGTAAGGTTCAGAGGCTCAGGAAGGAGTGCCCTAATGCTGAGTGCGGCGCTGGAACCTTCATGGCCAACCACTTTGATCGCCACTACTGCGGCAAGTGTGGTCTTACCTATGTTTACCAGAAAGCCGGTGCTTAA	468	0.5278	MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAILQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKAGA*	156

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Apr7g1647	155	PRINTS	Ubiquitin signature	11	31	IPR019956	-
	Apr7g1647	155	PRINTS	Ubiquitin signature	32	52	IPR019956	-
	Apr7g1647	155	PRINTS	Ubiquitin signature	53	74	IPR019956	-
	Apr7g1647	155	Pfam	Ribosomal protein S27a	102	147	IPR002906	GO:0003735\|GO:0005840\|GO:0006412
	Apr7g1647	155	SMART	ubq_7	1	72	IPR000626	GO:0005515
	Apr7g1647	155	ProSiteProfiles	Ubiquitin domain profile.	1	76	IPR000626	GO:0005515
	Apr7g1647	155	ProSitePatterns	Ubiquitin domain signature.	27	52	IPR019954	-
	Apr7g1647	155	CDD	Ubl_ubiquitin	1	76	-	-
	Apr7g1647	155	Gene3D	-	1	80	-	-
	Apr7g1647	155	SUPERFAMILY	Ubiquitin-like	1	93	IPR029071	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr7g1647	Apr-Chr7	23614604	23615282	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Apr7g1647	1	153	Cytoplasmic Ribosomal Protein Gene Family	AT1G23410	92.157	8.09e-92	261

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr7g1647	K02977		-	qsu:112033617	280.411

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