Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g1646 ATGTCAACACTGAACCATCTTTTTGATCTTCCAGAACAGATATGTTACGTACAATGTGGATTCTGTACCACCATTTTAATGGTAAGTGTCCCATGTAGCAGTTTGTCAATGGTGGTGACAGTGAGATGTGGGCACTGCACAAGTCTTCTTTCTGTTAATATGATGAAAGCTTCTTTTGTCCCTTTCCACCTTTTAGCATCTCTTAGTCATCTTGAGCCAAAAGAATGCAGTCCAGAAGTAGATGCAAATAAGAGTTTGAACAGCCATAGTGCATTCATGACAACTTATTCTGATTGTGAAGAAGAGGATGTGATTCCAATGAGTAATGTCGTGAACAAACCCCCAGAGAAGAGACAAAGAACACCATCAGCCTATAACCGCTTCATCAAAGAAGAGATTAAAAGGCTAAAAGCTGAACACCCTGACATGGCCCACAAAGAAGCTTTTAGCACAGCTGCAAAAAATTGGGCCAATTTCCCCCCAACTCAGTGCAAAGGAGATGAAGAGAGCTGTAGCCAGACAGATCAACTTGCAGATCTTGACTCCAATGTGGACCCTCATGATGCTGAGGTCAATGAAGAAGAAGGTCAAGGTTTCCGTGGAAGAAAAGTCCCAAGAAATTCCATCTTGGAAAGGACACCATTTGAGTGA 651 0.4209 MSTLNHLFDLPEQICYVQCGFCTTILMVSVPCSSLSMVVTVRCGHCTSLLSVNMMKASFVPFHLLASLSHLEPKECSPEVDANKSLNSHSAFMTTYSDCEEEDVIPMSNVVNKPPEKRQRTPSAYNRFIKEEIKRLKAEHPDMAHKEAFSTAAKNWANFPPTQCKGDEESCSQTDQLADLDSNVDPHDAEVNEEEGQGFRGRKVPRNSILERTPFE* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g1646 216 PANTHER PROTEIN YABBY 6-RELATED 1 180 IPR006780 GO:0007275
Apr7g1646 216 SUPERFAMILY HMG-box 109 162 IPR036910 -
Apr7g1646 216 MobiDBLite consensus disorder prediction 181 209 - -
Apr7g1646 216 Gene3D High mobility group box domain 110 177 IPR036910 -
Apr7g1646 216 MobiDBLite consensus disorder prediction 164 216 - -
Apr7g1646 216 MobiDBLite consensus disorder prediction 165 180 - -
Apr7g1646 216 CDD HMGB-UBF_HMG-box 120 163 - -
Apr7g1646 216 Pfam YABBY protein 11 163 IPR006780 GO:0007275
Apr7g1646 216 PANTHER AXIAL REGULATOR YABBY 4 1 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g1646 Apr-Chr7 23605841 23607914 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g1646 2 216 C2C2-YABBY Transcription Factor Family AT1G23420 59.471 1.55e-74 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Apr7g1646 YABBY 4.2e-62 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g1646 K25796 - gmx:100806755 379.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g1646 7 23605841 23607914 Apr7g1646 7 23605841 23607914 ECH
Apr7g1383 7 20951295 20952987 Apr7g1646 7 23605841 23607914 PCT