Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g1627 ATGATCCGAAAAACACATGGTTCGGATCGCCGGATACTAACGTTCCCGGCGGTTCATCCCTGCGAGAACATTGCTCCCTCAACCCTTCTCTCTTCGCTCATCACTCTCTCCAACGCCATTTCTAATTCCCAACACAGATTCTTCCCTTGTAACAAGCGAAACGCGAGAAACGCCATTCGTTTGGCCCGGCTTCTCCAACCTTTCCTTCATGAGATCCGAGACCTTCATTTGGGTCTTCCCGACCCGGCTACCCTTAGTTTGTCGGAGCTCCACCTCACCTTCCAGAAGCTTCTTTTCTTGCTGGAAGACTCTTCCCGCGAAGGTGCAAGGCTTTACATGTTAATGGAATCGGATCGGGTCGCAACTCAGTTTCGGGTCTTGGCCAGATCCATGGCCACTGCTTTGGACATTTTCCCTTTTGGTTCTGTTGAGGTCTCTGTGGAAGCTAAGGAGCAGATTTTGTTGCTGATGAAGCAAGCTAGGAAGGCCATGTTTGAATTTGAGCCTGATGATAAACGGGTTGTGATGGGTGTTATGTCGGGTTTGACCCTGTTTGGAAAGCGGGTTGCCCCGAATGAGGGTGATCTGAAGTGGGTTCTTGATTATATTGGGGTTAGGAGGTGGAGTGAGTGTAACAAGGAGGTGAAGTTTTTGGAGGGTGAAATTGGGTTTGAGTGTTTGAATGAGGGGAAGAGAAAGGTGGATTTTTTGAGTGGTTTGATTGGGTTCATGAGTTATTGTAGATGCGTGGTGATGGAGGATGTTGATGGTGCAGAAGGTAACAAGAAATCTGAAAGGAGCATTGAAAATGAGGTGATTCTGAGTTGCATTAACTCAGATGATTTTCGATGTCCAATCTCTTTGGAGTTTATGAGTGATCCGGTGACAATAGAGACCGGTCATACTTATGATCGTTCTTCAATTCTCAAATGGTTTAGAAGTGGAAATGCAGTATGTCCCAAGACGGGTAAAAGGCTTAGTAGCATTGAATTGGTCCCGAACTTGGTGCTACGGAGGTTGATTCAGCAATATTGCTATGCAAATGGCATTGCTTTTGCTGATTTGGGTCGTAGGAATCGGGACATCCCCAGAACAGTGCAGCCAGGAAGTGTGGCAGAAGAGGAAACAATGAAAATGTTGGGTGGTTTTCTCCGTGGAAGGCTTGAGAATGGAACTGGGGAAGAGAAGAACCGAGCTGCTTTGGAAATAAGGCTTCTTTCCAAAACAAGCATTTTTAGTAGGTCTTGTTTGGTGGAAGCTGGTTTGGTTCCTCTTTTGTTGTTGTCTTTGAGAGATTCATTGACACAAGAGAATGCCATTGCAGCCATTTTGAATCTCTCAAAATACTCAAAGAGTAGAGCTGAGATGGTTGAGAATTTGGGGTTGGAATTGATTGTGGGGGTCTTAAAGAAAGGGATAAAGATTGAAGCTCGCCAGCATGCTGCTGCTGTGTTGTTTTACCTTGCTTCAAATGCTGAGTATGGGAACATGATAGGAGACGAGCCAGAAGCAATTCCATCATTGATCAGGCTCATCGAAGATGGCTCTGATCGAAGCAAAAAGAATGGTTTGGTTGCAATTTTTGGCCTCCTTAAGCACCCTGAAAATCATAGGAGGGTGCTAAGAGCTGGAGCAATTCCTTTGTTGATTAACATCTTAAAAGGATGTGAAAAGGAAGAACTCATCACAGACTCACTTGCAATTCTAGCGACTATGGCAGAGAGGAGTGAGGGAACATTAGCAATCCTTCACTTTGGAGCTTTGCTTGTAGCTGTTGAAATTTTGAGTTCTTCCACTTCAAGGGTGGGGAAGGAGCATTGCGTGTCTTTATTGCTTTCTCTTTCAATAAATGGTGGAGTAGACGTGGTTGCTCATTTAGTGAAGATCCCTTCTCTTATGGGATCTTTATATTCCCAACTCAGTGAAGGCACATGTCGAGCAAATAAAAGGGCCAGTGCTCTCATCAGGATCCTTCATGATTTTTATGAAAGGTCTTCTGGCTTCAAGACTTCAGTTATTCCACAAGAACAATTTGTTCATGTTTGGTAA 2049 0.4466 MIRKTHGSDRRILTFPAVHPCENIAPSTLLSSLITLSNAISNSQHRFFPCNKRNARNAIRLARLLQPFLHEIRDLHLGLPDPATLSLSELHLTFQKLLFLLEDSSREGARLYMLMESDRVATQFRVLARSMATALDIFPFGSVEVSVEAKEQILLLMKQARKAMFEFEPDDKRVVMGVMSGLTLFGKRVAPNEGDLKWVLDYIGVRRWSECNKEVKFLEGEIGFECLNEGKRKVDFLSGLIGFMSYCRCVVMEDVDGAEGNKKSERSIENEVILSCINSDDFRCPISLEFMSDPVTIETGHTYDRSSILKWFRSGNAVCPKTGKRLSSIELVPNLVLRRLIQQYCYANGIAFADLGRRNRDIPRTVQPGSVAEEETMKMLGGFLRGRLENGTGEEKNRAALEIRLLSKTSIFSRSCLVEAGLVPLLLLSLRDSLTQENAIAAILNLSKYSKSRAEMVENLGLELIVGVLKKGIKIEARQHAAAVLFYLASNAEYGNMIGDEPEAIPSLIRLIEDGSDRSKKNGLVAIFGLLKHPENHRRVLRAGAIPLLINILKGCEKEELITDSLAILATMAERSEGTLAILHFGALLVAVEILSSSTSRVGKEHCVSLLLSLSINGGVDVVAHLVKIPSLMGSLYSQLSEGTCRANKRASALIRILHDFYERSSGFKTSVIPQEQFVHVW* 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g1627 682 SUPERFAMILY RING/U-box 280 353 - -
Apr7g1627 682 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 279 352 IPR013083 -
Apr7g1627 682 CDD RING-Ubox_PUB 282 324 IPR045210 -
Apr7g1627 682 Pfam U-box domain 280 348 IPR003613 GO:0004842|GO:0016567
Apr7g1627 682 Gene3D - 384 665 IPR011989 -
Apr7g1627 682 ProSiteProfiles U-box domain profile. 277 351 IPR003613 GO:0004842|GO:0016567
Apr7g1627 682 PANTHER U BOX DOMAIN-CONTAINING 5 672 - -
Apr7g1627 682 SMART Ubox_2 281 344 IPR003613 GO:0004842|GO:0016567
Apr7g1627 682 SUPERFAMILY ARM repeat 385 658 IPR016024 -
Apr7g1627 682 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 18 5 672 - -
Apr7g1627 682 SMART arm_5 449 490 IPR000225 GO:0005515
Apr7g1627 682 SMART arm_5 409 448 IPR000225 GO:0005515
Apr7g1627 682 SMART arm_5 533 574 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g1627 Apr-Chr7 23442744 23446044 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g1627 1 682 U-box Gene Family AT1G60190 45.989 0.0 571
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g1627 - - gmx:100795816 967.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g1627 7 23442744 23446044 Apr7g1627 7 23442744 23446044 ECH