Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g1619 ATGTATAGGGTTCATTCTCATTCTCAAATTCTTCAGAGCAATGGTGCTATCACTAGCCCCCCTATTCTTTCTCCATATTCTTCTTCATCACTGCCTTATAGTTCTAACTATCAGAATCAGAGACAGTCAGCTCCATCCCCAGCTTCTTCATCTGGGGGTAGAATAAGCCCTGCAATTCTTTTCATTATAGTTATTTTAGCTGTGGTGTTTTTCATCTTGGGTCTGCTTCACTTGCTTGTTAGATTTCTCATAAAGCACAGGTCTTCTTCATCAATTTCCCAATCCAATAGATACCCTGACATGTCTGAATCAGATGCTTACCAGAGACAGTTACAGCAACTCTTCCATCTTCATGATTCAGGCCTGGATCAGGCCTTCATAGATGCTCTCCCTGTCTTCTTTTACAAAGAGATAATAGGCTTGAAAGAGCCATTTGATTGTGCAGTTTGCCTCTGTGAGTTCTTGGAACAAGATAAGCTGAGATTGCTTCCCATGTGTAACCATGCTTTTCACATTGATTGCATAGACACATGGTTGCTGTCTAATTCAACTTGTCCTCTTTGTAGAGGAACTCTTTATTCACCAGGCTTTGCCTTTGAAAACTCAGTTTTTGACTTTGAGGGTCCACATGAGGAAGATGGGATTTCAGGCAGTGGTGGGGGTGGGGTTGCTTCTGTTAACAAAACTACAGAAAGTCATATAGTGAATGGGAAAAGGGTGTTTTCTGTCAGGCTTGGAAAATTTAGAAGCACAAATGATGGAGAGAGGGTAGAGAAGGGTGAAGGAGAGAGCAGCAATGGCAATTTGGATGTAAGGAGATGCTATTCAATGGGGTCATTTCAGTACGTGGTTGCTGATTCAGATCTGAGAGTGGCTTTATGCCCAAGTAGAGGTGATGGAGGTAGCAGTGACAGCATGAGACTGCTGAAGGGAAGAGCAGCTCCAAATTTGAGTTCTTCCACTGATGGGGATGTTGAGGGTAAAAAAATCAACATTGCAAGGAAAGGTGAAAGCTTCTCTGTTTCCAAGATCTGGCAATGGTCTAGGAAAGATAAGTTAATAAGTTCATCAGATGCCCATTTCCATAATTCTGCTGTCACTTCAAATTTGCCATGGATGAATAAAGCCAGAGGTACATGA 1140 0.4202 MYRVHSHSQILQSNGAITSPPILSPYSSSSLPYSSNYQNQRQSAPSPASSSGGRISPAILFIIVILAVVFFILGLLHLLVRFLIKHRSSSSISQSNRYPDMSESDAYQRQLQQLFHLHDSGLDQAFIDALPVFFYKEIIGLKEPFDCAVCLCEFLEQDKLRLLPMCNHAFHIDCIDTWLLSNSTCPLCRGTLYSPGFAFENSVFDFEGPHEEDGISGSGGGGVASVNKTTESHIVNGKRVFSVRLGKFRSTNDGERVEKGEGESSNGNLDVRRCYSMGSFQYVVADSDLRVALCPSRGDGGSSDSMRLLKGRAAPNLSSSTDGDVEGKKINIARKGESFSVSKIWQWSRKDKLISSSDAHFHNSAVTSNLPWMNKARGT* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g1619 379 CDD RING-H2_PA-TM-RING 146 189 - -
Apr7g1619 379 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 372 - -
Apr7g1619 379 SUPERFAMILY RING/U-box 126 195 - -
Apr7g1619 379 SMART ring_2 147 188 IPR001841 -
Apr7g1619 379 MobiDBLite consensus disorder prediction 33 52 - -
Apr7g1619 379 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 122 194 IPR013083 -
Apr7g1619 379 ProSiteProfiles Zinc finger RING-type profile. 147 189 IPR001841 -
Apr7g1619 379 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 1 372 - -
Apr7g1619 379 Pfam Ring finger domain 146 189 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g1619 Apr-Chr7 23338982 23340536 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g1619 74 352 C3H Transcription Factor Family AT2G18650 38.835 3.84e-56 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g1619 - - gmx:100805154 539.65