Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g1573 ATGAAGAGGTCAAGAGATGATGTTTTCACGAGTTCTTCTCAACTCAAACGCCCTATGTTGTCTTCCCGAGGAGAAGCGTCCGGGCAACCTCAGACTCAGATGATGAATGGAGGTGCTCAGAAACTGACTACTAATGATGCCCTAGCATATCTCAAGGCAGTAAAGGATATATTTCAAGATAAGAGGGACAAGTATGATGACTTCTTGGAGGTCATGAAAGATTTCAAGGCTCAAAGAATTGATACTGCAGGCGTGATTGCAAGAGTGAAGGAACTGTTTAAAGGGCATAGAGATCTTATATTGGGATTTAACACCTTCTTGCCTAAGGGATATGAAATCACACTTCCACTGGAGGATGAACAACCTCTTTTAAAGAAACCTGTGGAATTTGAAGAAGCTATAAATTTTGTGAACAAGATTAAGACTCGATTCCAAGGTGATGATCATGTGTACAAGTCGTTTCTTGACATATTGAATATGTACAGAAAGGAAAACAAGTCTATCACTGAGGTCTATCAGGAGGTTTCTGCAATTTTCCAGGATCACCCTGATCTTCTTGATGAGTTTACTCATTTTCTTCCAGACACCTCTGCATCTGCCTCTACTCATTATGGTTCTGCTCGAAATCATATGCTTCGTGATAGGAGCTCTGCAATGCCAACAGTACGGCAAATGCATGTAGAAAAGCGAGAAAGAACCATGGTTTCACATGGCGATCGTGACCCCAGTGTTGATCGGCCAGACCCAGATCATGACAGAGGTTTGTTGAGGTCAGAAAGGGAGCAGCAGAGGAGACGTTTGGACAAGGAAAAGGAACGTAGAGATGATAGAGAAAAGAGAGAACGGGAAAGGAACGATAGAGATTATGAGCATGATGGTGGTCGAGATAGGGAGCGGTTCTCCCACAGACGGAAATCTGATCGTAAGGCTGAAGACTCTGGACCTGAACCAATGCTTGATGCAGATGAAAATTTTGTTATGCGTCCTATGTCAACCACCTGCGATGATAAAAATTCTCTAAAAAGTATGTATAGTCAAGAGTTTGCTTTCTGTGAAAAAGTCAAAGAGAAATTACGAAATCCTGACAACTACCAGGAATTTTTGAAGTGCTTACATATTTACAGCAGGGAAATAATTACCAGACAAGAATTGCAGTCCTTGGTGGGCGATTTACTGGGAAAATATCCAGATCTGATGGAGGGGTTTAATGAATTTTTGCTACAATCTGAAAAGAATGATGGTGGATTCCTTGCTGGTGTTATGAATAAAAAGTCCTTATGGAATGATGGACATGGACTGAAATCAATGAAGGTTGAAGACAGGGATAGAGATCGGGGCCAAGATAGAGATAGAGACCATTATAGGGATGAAGGAATAAAAGAAAAGGATCGTGAATTCCGAGAAAGGGATAAATCTACTGTGTTTGCTAACAAGGATGTATTAGGTCCTAAGATGTCTCTGTATCCCAGCAAGGATAAGTATTTATCAAAACCTATAAATGAGTTGGACCTTTCTAATTGTGACCAATGCACCCCTAGTTACCGTCTCCTACCAAAAAATTACCCAATACCTGTAGCTAGCCACAAAACAGAACTTGGTGCAGAAGTGTTGAATGATCACTGGGTGTCCGTCACTTCTGGAAGTGAGGATTATTCCTTCAAACATATGCGCAAAAATCAGTATGAAGAGAGCTTGTTTAGATGTGAAGATGACAGGTTTGAACTTGATATGTTGTTAGAGTCTGTAAATGTGACAACCAAACGAGTGGAAGAGCTGTTAGAAAAGATTAACAGTAATATAATTAAAGGAGACAGCCCAATTCGTATTGAGGAGCACTTAACAGCTATAAATCTTAGGTGTATTGAGCGATTATATGGTGACCATGGGCTAGATGTGATGGAAGTGCTAAGGAAGAATGCACCTCTAGCTTTGCCAGTGATATTAACACGCTTGAAGCAGAAACAGGAAGAGTGGGCAAGGTGTCGTGCTGATTTTAGTAAAGTTTGGGCAGAAATATATTCCAAGAACTATCACAAATCTCTTGATCATCGTAGCTTCTACTTTAAACAACAGGATACAAAAAGCTTGAGCACCAAAGCCTTACTGGCGGAAATAAAAGAAATTAGTGAGAAGAAACGCAAAGAAGATGACGTTCTTCTGGCTATTGCTGCTGGAAATAGACGGCCTATTCTTCCAAATTTGGAATTTAAGTATTCTGATCCAGATATTCATGAAGATTTGTATCAGCTCATAAAATATTCCTGTGGAGAACTTTGCACAACTGAACAGTTGGATAAAGTTATGAAGGTTTGGACAACATTTTTGGAACCCATGCTTTGTGTTCCTTCTAGACCCCAGGGTGCTGAGGATACAGAAGATGTTGTCAAGGCTAAGAATAATTCTGTCATAAGTGGCATTGCAAGTGTTGCTGAAAGTGATGGTAATCCTGCTGTTGGTGCTACCATTGTGAATCCAAAGCATCTAAATGTTTCTAGAAATGGGGATGATTGTATGCCGTTGGATCAATCAACATCTAGCAAAGCATGGCATTCAAATGGTGACAGTGGGGTTAGAGAAGATAAGTGCATTGATGACCGTACAGTACATAAAACGGAAACTTTGGGCAGCAACATCCAGCATGGTAAAGTGAATAGTATTGTATTCACACCCGATGAACCATCAGTAGTCCATAAGCAAGATCAGTCAAGCGAACGGTTAATGAATGCTACTGTCTCAGCAGCATCTGGAATGGAGCAAAGTAATGGAAGGACAAACTTAGATACTGCATCAGGAATCACTGCCGCTCCATCTAGACCTGGTAATGTTACTGTTGAGAGAGGACTTGATTTACCTTCATCAGAGGGTGGTGATTCTACTAAACCAAGTACATCCACAAATGGGGCCGTCACTGGAGGTGCCAAAGTTCACAGATACCAAGAGGACTCAGTTCTACCCTTCAAAGGTGAAAGAGAAGAGGGTGAGTTATCTCCAAATGGAGACTTTGAAGAAGATAACTTTGCAGTTTATGGAGGTACTGGTTTGAATGTAGTGCATAAAGGAAAGAATAGCAGTGTGAGTCGACAATACCAAAATAGACATGGGGAAGAAGTTTGTGGCGAAACCAGAGGAGAAAATGATGCTGATGCTGATGATGAAGGTGAGGAAAGCCCTCACAGGTCATCAGAGGACAGTGAAAATGCTTCCGAAAATGTTGATGTTTCTGGAAGTGAGTCTGCTGATGGTGAGGAGTGTTCTCGAGAAGAGCAGGAAGATGGGGAGCATGATAACAAGGCTGAGAGTGAAGGTGAAGCCGAAGGAATGGCTGATGCCCATGATGTTGAAGGAGATGGAACATCATTGCCATATTCTGAACGCTTTCTATTAACTGTAAAACCTCTAGCAAAGTATATCCCCCCAATGTTACATGAGAAGGACAGGAATTCTCAAGTGTTTTATGGAAATGATTCCTTTTATGTGCTGCTTAGACTTCATCAGACATTGTATGAGAGGATACAATCAGCAAAGATTAACTCATCGTCTGCTGAAAGGAAATGGAAGGCTCCAAGCGATACAAGCTCTGCGGATCAATACAATAGGTTCATGAATTCCCTTTACAATTTATTGGATGGTTCTTCTGATAATACAAAATTTGAGGATGACTGCCGAGCTATTATTGGAACTCAATCATATGTCTTATTCACATTAGACAAGCTGATTTATAAACTTGTTAAACAGCTTCAAGCTGTTGCCAGTGATGAGATAGATAATAAGCTTCTACAACTATATGCATATGAAAAATCAAGAAAACCTGGAAAATTTGTGGATGTAGTCTATCATGAAAATGCTCGTGTTCTTCTTCATGATGAGAACATATATCGTATTGAATATTCACCTGGACCAATGAAACTGTCTATTCAATTGATGGACTGTGGACATGATAAGCCTGAAGTGACTGCTGTGTCGGTGGACCCTAATTTTGCAACCTATCTGCACTGTGACTTCCTCTCTGTTGTCCCTGACAAAGAGAAGTCAGGAATTTTCTTGAAGAGGAATATACGGAGATATGCTAGTAATGATGAATTTTCAAGCCAGGCTATGGAAGGACTAAAAATTATTAATGGTCTGGAATGTAAGATAGCTTGCAGTTCATCTAAGGTATCTTACGTTTTAGATACTGAAGACCTTTTGTTTCGGATGAGAAGAGAAAGAAGACCGTTGTGTCAAAAGAGTTCATGCCATGAGCAGGCGAAGTCTTCAAACATTTGTTCAAACAGAGTACAAAGATTCCGCAAATTGTTTTCTTTTACATGA 4311 0.4043 MKRSRDDVFTSSSQLKRPMLSSRGEASGQPQTQMMNGGAQKLTTNDALAYLKAVKDIFQDKRDKYDDFLEVMKDFKAQRIDTAGVIARVKELFKGHRDLILGFNTFLPKGYEITLPLEDEQPLLKKPVEFEEAINFVNKIKTRFQGDDHVYKSFLDILNMYRKENKSITEVYQEVSAIFQDHPDLLDEFTHFLPDTSASASTHYGSARNHMLRDRSSAMPTVRQMHVEKRERTMVSHGDRDPSVDRPDPDHDRGLLRSEREQQRRRLDKEKERRDDREKRERERNDRDYEHDGGRDRERFSHRRKSDRKAEDSGPEPMLDADENFVMRPMSTTCDDKNSLKSMYSQEFAFCEKVKEKLRNPDNYQEFLKCLHIYSREIITRQELQSLVGDLLGKYPDLMEGFNEFLLQSEKNDGGFLAGVMNKKSLWNDGHGLKSMKVEDRDRDRGQDRDRDHYRDEGIKEKDREFRERDKSTVFANKDVLGPKMSLYPSKDKYLSKPINELDLSNCDQCTPSYRLLPKNYPIPVASHKTELGAEVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVTTKRVEELLEKINSNIIKGDSPIRIEEHLTAINLRCIERLYGDHGLDVMEVLRKNAPLALPVILTRLKQKQEEWARCRADFSKVWAEIYSKNYHKSLDHRSFYFKQQDTKSLSTKALLAEIKEISEKKRKEDDVLLAIAAGNRRPILPNLEFKYSDPDIHEDLYQLIKYSCGELCTTEQLDKVMKVWTTFLEPMLCVPSRPQGAEDTEDVVKAKNNSVISGIASVAESDGNPAVGATIVNPKHLNVSRNGDDCMPLDQSTSSKAWHSNGDSGVREDKCIDDRTVHKTETLGSNIQHGKVNSIVFTPDEPSVVHKQDQSSERLMNATVSAASGMEQSNGRTNLDTASGITAAPSRPGNVTVERGLDLPSSEGGDSTKPSTSTNGAVTGGAKVHRYQEDSVLPFKGEREEGELSPNGDFEEDNFAVYGGTGLNVVHKGKNSSVSRQYQNRHGEEVCGETRGENDADADDEGEESPHRSSEDSENASENVDVSGSESADGEECSREEQEDGEHDNKAESEGEAEGMADAHDVEGDGTSLPYSERFLLTVKPLAKYIPPMLHEKDRNSQVFYGNDSFYVLLRLHQTLYERIQSAKINSSSAERKWKAPSDTSSADQYNRFMNSLYNLLDGSSDNTKFEDDCRAIIGTQSYVLFTLDKLIYKLVKQLQAVASDEIDNKLLQLYAYEKSRKPGKFVDVVYHENARVLLHDENIYRIEYSPGPMKLSIQLMDCGHDKPEVTAVSVDPNFATYLHCDFLSVVPDKEKSGIFLKRNIRRYASNDEFSSQAMEGLKIINGLECKIACSSSKVSYVLDTEDLLFRMRRERRPLCQKSSCHEQAKSSNICSNRVQRFRKLFSFT* 1437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g1573 1436 MobiDBLite consensus disorder prediction 955 970 - -
Apr7g1573 1436 MobiDBLite consensus disorder prediction 438 464 - -
Apr7g1573 1436 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 478 1414 - -
Apr7g1573 1436 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 1 462 - -
Apr7g1573 1436 PANTHER SIN3B-RELATED 1 462 IPR039774 GO:0003714
Apr7g1573 1436 PANTHER SIN3B-RELATED 478 1414 IPR039774 GO:0003714
Apr7g1573 1436 MobiDBLite consensus disorder prediction 1 37 - -
Apr7g1573 1436 MobiDBLite consensus disorder prediction 228 322 - -
Apr7g1573 1436 Gene3D Paired amphipathic helix 125 197 IPR036600 GO:0006355
Apr7g1573 1436 ProSiteProfiles PAH domain profile. 126 196 IPR003822 GO:0006355
Apr7g1573 1436 MobiDBLite consensus disorder prediction 1052 1066 - -
Apr7g1573 1436 SUPERFAMILY PAH2 domain 338 406 IPR036600 GO:0006355
Apr7g1573 1436 MobiDBLite consensus disorder prediction 1019 1118 - -
Apr7g1573 1436 MobiDBLite consensus disorder prediction 1090 1112 - -
Apr7g1573 1436 SMART hdac_interact2seq4b 506 606 IPR013194 -
Apr7g1573 1436 MobiDBLite consensus disorder prediction 915 1004 - -
Apr7g1573 1436 Coils Coil 253 280 - -
Apr7g1573 1436 MobiDBLite consensus disorder prediction 915 937 - -
Apr7g1573 1436 MobiDBLite consensus disorder prediction 11 37 - -
Apr7g1573 1436 MobiDBLite consensus disorder prediction 980 995 - -
Apr7g1573 1436 Pfam Sin3 family co-repressor 509 599 IPR013194 -
Apr7g1573 1436 SUPERFAMILY PAH2 domain 40 109 IPR036600 GO:0006355
Apr7g1573 1436 ProSiteProfiles PAH domain profile. 340 409 IPR003822 GO:0006355
Apr7g1573 1436 Pfam Paired amphipathic helix repeat 362 406 IPR003822 GO:0006355
Apr7g1573 1436 Pfam Paired amphipathic helix repeat 149 193 IPR003822 GO:0006355
Apr7g1573 1436 Pfam Paired amphipathic helix repeat 63 107 IPR003822 GO:0006355
Apr7g1573 1436 MobiDBLite consensus disorder prediction 228 316 - -
Apr7g1573 1436 SUPERFAMILY PAH2 domain 123 195 IPR036600 GO:0006355
Apr7g1573 1436 Gene3D Paired amphipathic helix 338 410 IPR036600 GO:0006355
Apr7g1573 1436 Pfam C-terminal domain of Sin3a protein 1151 1396 IPR031693 -
Apr7g1573 1436 Gene3D Paired amphipathic helix 46 108 IPR036600 GO:0006355
Apr7g1573 1436 ProSiteProfiles PAH domain profile. 40 110 IPR003822 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g1573 Apr-Chr7 22824478 22858757 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g1573 29 123 WRKY Transcription Factor Family AT4G12020 57.895 9.39e-24 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Apr7g1573 Sin3a_C 4.9e-60 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g1573 K11644 - gmx:100811928 2422.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g1573 7 22824478 22858757 Apr7g1573 7 22824478 22858757 ECH