Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g1569 ATGTCTCGCACGTGCTCACAGTGCGGCAACAACGGCCACAACTCTCGGACATGCACCGACGGCGCCGCTGCCGCTTCCGGCGGAGGGTCTCCGAGAGAGAACGGCATCATGCTGTTCGGTGTGCGATTGATGGAAGGAAACTCATCGTTCAGGAAGAGTGCTAGCATGAACAACCTCTCCCAGTACGAGCCGGACTCCAACGGCGCAGACGCCGGCTATGCCTCCGACGACGTCGTTCATGCCTCCGGTCGCACCCGGGAGCGCAAGCGAGGCGTTCCTTGGACTGAGGAAGAACACAGGTTGTTCCTGTTGGGATTGCATAAGGTGGGTAAAGGAGATTGGAGAGGAATTTCTAGAAACTTCGTTAAGACTCGCACTCCAACTCAGGTTGCTAGTCATGCTCAAAAGTACTTCCTCCGCCGCCATAATCAGAACCGTCGCCGGAGGAGATCTAGCCTTTTCGACATCACCACTGATACAGTGATGGAATCTTCTACTATAATGGAAGAAGAACAAGATCAGCAAGAAACGATGGCACCGCCTACTCCAGCAGCATATCCACCAGCACATTACGGTGGCTTTCCTAGCTCGGGTTTTCCGATGAGTCTGGCTCCGGCGGTGTTGCCGGCTGCTAGTGGCGAGAGACTGGCCAAACCGATTAGGCCAACACCTATTTTGCCAGTGCCTCCGTCCTCCAAGATGGCTAATTTGAACTTGAAAGAGAAAGCTTCTCCTACTAATCTCATTGAGCCTTTACCGTTGTCGTTAAATCTGCCGCCGCCGTCTCAAGATCAGTCGCCGGCAAGTAGTAGCCACTCCTCCTCATCGTCATCGGCGGCGGCTTTTCAGGCTATGTCCGCAGGAAAGTTCAGCGGTGGTGGGGACAGTATTATCAGTGTTGCTTGA 906 0.5419 MSRTCSQCGNNGHNSRTCTDGAAAASGGGSPRENGIMLFGVRLMEGNSSFRKSASMNNLSQYEPDSNGADAGYASDDVVHASGRTRERKRGVPWTEEEHRLFLLGLHKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRHNQNRRRRRSSLFDITTDTVMESSTIMEEEQDQQETMAPPTPAAYPPAHYGGFPSSGFPMSLAPAVLPAASGERLAKPIRPTPILPVPPSSKMANLNLKEKASPTNLIEPLPLSLNLPPPSQDQSPASSSHSSSSSSAAAFQAMSAGKFSGGGDSIISVA* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g1569 301 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 89 140 IPR006447 GO:0003677
Apr7g1569 301 Pfam Myb-like DNA-binding domain 93 138 IPR001005 -
Apr7g1569 301 PANTHER TRANSCRIPTION FACTOR KUA1 1 298 - -
Apr7g1569 301 MobiDBLite consensus disorder prediction 250 278 - -
Apr7g1569 301 SMART sant 90 140 IPR001005 -
Apr7g1569 301 ProSiteProfiles Myb-like domain profile. 86 138 IPR001005 -
Apr7g1569 301 MobiDBLite consensus disorder prediction 58 84 - -
Apr7g1569 301 MobiDBLite consensus disorder prediction 261 278 - -
Apr7g1569 301 MobiDBLite consensus disorder prediction 1 31 - -
Apr7g1569 301 ProSiteProfiles Zinc finger CCHC-type profile. 5 20 IPR001878 GO:0003676|GO:0008270
Apr7g1569 301 MobiDBLite consensus disorder prediction 1 21 - -
Apr7g1569 301 CDD SANT 93 138 IPR001005 -
Apr7g1569 301 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 86 142 IPR017930 -
Apr7g1569 301 Gene3D - 92 143 - -
Apr7g1569 301 ProSiteProfiles SANT domain profile. 89 142 IPR017884 -
Apr7g1569 301 PANTHER TRANSCRIPTION FACTOR MYB1R1-LIKE 1 298 - -
Apr7g1569 301 SUPERFAMILY Homeodomain-like 88 141 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g1569 Apr-Chr7 22776185 22778097 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Apr7g1569 Myb_DNA-binding 3.6e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g1569 - - gmx:778178 400.593
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g1569 7 22776185 22778097 Apr7g1569 7 22776185 22778097 ECH
Apr7g1569 7 22776185 22778097 Apr7g1569 7 22776185 22778097 PCT