Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g1562 ATGGATCCCGCCGCCATCATCAACGCCACGTCGTTTCACTTATCAGAGATCTGGCACTTCCTTCCGCCCAATGCGCCACAAAACCCAACCCCTCAGTTCGGGGATTTCGCTCCGCCTCCGACCCGACACTCCCTTCCGGGTACCGACCCGATAATTCCGCCCACCATTGCCCACAACGGAAAAAAGAGACGCGACTCCGAGGAGGAACCCGCTAAGGGCGTCTCCACCAGCAATGGCGTGAACGAGGGTGGTGATGGAAAACGTGTTAAGACAATAGGGAATAGGAGTGAGAATAGTAAGGGCGATGCAGAAGCCAGTTCAGGAAAGCCTGCGGAGCAAGGTTGTAAGCAACCTTCTGAGCCTCCTAAGCAAGACTACATTCATGTACGAGCTAGAAGGGGTCAAGCTACTGATAGCCATAGTCTTGCGGAAAGAGCTAGAAGGGAAAAGATTAGTGAAAGGATGAAAATTCTTCAGGATTTAGTCCCTGGTTGTAACAAGGTTATTGGGAAAGCATTGGTCCTTGATGAGATAATTAATTATATCCAATCGCTTCAGCGCCAAGTAGAGTTTTTGTCAATGAAGCTTGAAGCAGTAAATTCTAGACTGACCCCTGGAATTGAAGTGTTTCCTCCTAAAGATTTTGATCAGCAAACATTTGATACAGCCGGCATGCCATTTACTTCACAAGCTACAAGAGAGTATAGTCGAGGTTCATCACCGGATTGGTTACATATGCAGGTGGGAGGTGGTTTTGAAAGAGCAACGTAG 771 0.4825 MDPAAIINATSFHLSEIWHFLPPNAPQNPTPQFGDFAPPPTRHSLPGTDPIIPPTIAHNGKKRRDSEEEPAKGVSTSNGVNEGGDGKRVKTIGNRSENSKGDAEASSGKPAEQGCKQPSEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRLTPGIEVFPPKDFDQQTFDTAGMPFTSQATREYSRGSSPDWLHMQVGGGFERAT* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g1562 256 Gene3D - 132 205 IPR036638 GO:0046983
Apr7g1562 256 Coils Coil 182 202 - -
Apr7g1562 256 MobiDBLite consensus disorder prediction 23 123 - -
Apr7g1562 256 PANTHER BNAC05G07950D PROTEIN 1 256 - -
Apr7g1562 256 SMART finulus 141 191 IPR011598 GO:0046983
Apr7g1562 256 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 256 IPR024097 GO:0006355
Apr7g1562 256 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 133 203 IPR036638 GO:0046983
Apr7g1562 256 CDD bHLH_AtBPE_like 125 210 - -
Apr7g1562 256 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 135 185 IPR011598 GO:0046983
Apr7g1562 256 Pfam Helix-loop-helix DNA-binding domain 139 186 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g1562 Apr-Chr7 22708925 22711695 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g1562 1 242 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G59640 54.924 1.50e-69 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr7g1562 HLH 2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g1562 - - gmx:100794893 378.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g1562 7 22708925 22711695 Apr7g1562 7 22708925 22711695 ECH
Apr7g1350 7 20590014 20594318 Apr7g1562 7 22708925 22711695 PCT