Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g1556 ATGTTCGTACCTACTCAAGAATTCCTAGAAGATGGTGCATCATGCATCCAAATGAACTTTTCTAATGCTTTCATTCCTAACGAGTTGATTAGCAGCATGATGCCAGACGTGATATCTTATGGCAAAGCTGTGATTCAGAATTGTCGTTCTGATTACGTTTTTCAAAGTCCTAAGTTGCGTTTATTCACTTTAGTTTTGGATATTTTCGTTCAATGTTTGTACGATGAGCGTGATAATAACATCATCAACATGATCATGGGCGAGTCTGTGAGAGAGGTACACATGGTTCCTGCATCAATGACTGCCATTGAAACCATCAAGAAAGTGAAGCTAGAAGAAAGTTCTATGGTTGACCAGTGTAGTATTTGTCTAATCGAGTTTGATAAAGACATGGAGGTTTCGATGATGCCATGCAAGCATGTTTATCATCAAGAATGCCTCATCAAGTGGCTGAAAACGAGTCATACGTGCCCTCTATGTCGATACTCTATGCCTACTTCATGA 504 0.3948 MFVPTQEFLEDGASCIQMNFSNAFIPNELISSMMPDVISYGKAVIQNCRSDYVFQSPKLRLFTLVLDIFVQCLYDERDNNIINMIMGESVREVHMVPASMTAIETIKKVKLEESSMVDQCSICLIEFDKDMEVSMMPCKHVYHQECLIKWLKTSHTCPLCRYSMPTS* 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g1556 167 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 52 166 - -
Apr7g1556 167 SMART ringv_2 119 161 IPR011016 GO:0008270
Apr7g1556 167 ProSiteProfiles Zinc finger RING-type profile. 120 161 IPR001841 -
Apr7g1556 167 SMART ring_2 120 160 IPR001841 -
Apr7g1556 167 SUPERFAMILY RING/U-box 109 165 - -
Apr7g1556 167 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 86 167 IPR013083 -
Apr7g1556 167 PANTHER F6A14.12 PROTEIN-RELATED 52 166 - -
Apr7g1556 167 Pfam Ring finger domain 118 161 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g1556 Apr-Chr7 22661107 22661610 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g1556 88 165 C3H Transcription Factor Family AT1G18760 32.911 7.55e-16 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g1556 - - aprc:113870408 344.354