Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g1546 ATGGGTGGTGGTGAATACTACAAGATACTGATGGTGAATCATGATGCCACTGATGAGGAACTGAAGAAGGCTTATAAAGGGTTGGCTATGAGATGGCACCCAGATAAGAACCCTCTTAAGAAAGAAGAGTTTGAGGCCAAGTTTAAGCAAGTTTCTGAAGCCTATGATGTGCTTATTGACCCCAAGAAGCGCAAGATCTATGACTTATATGGTCACTATCCCCTTAACTCTCAACGTTTTAACAAAGATAACGGTGTTGGGAATAATATAAAGGAAAACAAAGAAAGGGTTGTTGAGAACACGTTGGCATGTACTCTTGAGGAGCTTTACAACGGTTGCAGAATGAAGTTGAGGGTCACAGGAACTGATGAATTTGGAAAATTGAAGTCTGTAGATGAAGTCCTGAGGATCGATATCAAACCTGGGTGGAAGAAGGGCACAAAAATCACTTTTCCTGGTAAAGGCAATCAAGAACTTGGAGGTGATCTAATATTTGTGGTGGATGAGAGACCTCATGCTGTTTTCAAGAGGGATGGAAATGATTTAGTAGTGATCCACGAGATATTACTTAGAGATGCTCTTACAGGAACAACCCTCAACTTGACTACCTTGGATGGAAGAGATCTCACAATCCAAGTCACTGATATTGTGAAACCAGGCTATGAGCTGGTGGTCCCAAATGAAGGTATGCCCATTACAAAGGAACCTGGCAAGAAAGGAAACCTCAGAATCAAGTTTGGTGTTGTGTTTCCACCGAATCTGACCACACAACAGAAGTATGATCTAAGAAGGATTCTAATTGATGCTGATTCCTAA 816 0.4142 MGGGEYYKILMVNHDATDEELKKAYKGLAMRWHPDKNPLKKEEFEAKFKQVSEAYDVLIDPKKRKIYDLYGHYPLNSQRFNKDNGVGNNIKENKERVVENTLACTLEELYNGCRMKLRVTGTDEFGKLKSVDEVLRIDIKPGWKKGTKITFPGKGNQELGGDLIFVVDERPHAVFKRDGNDLVVIHEILLRDALTGTTLNLTTLDGRDLTIQVTDIVKPGYELVVPNEGMPITKEPGKKGNLRIKFGVVFPPNLTTQQKYDLRRILIDADS* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g1546 271 CDD DnaJ_C 98 254 - -
Apr7g1546 271 PANTHER DNAJ HEAT SHOCK FAMILY PROTEIN 1 268 - -
Apr7g1546 271 Gene3D DnaJ domain 2 93 IPR036869 -
Apr7g1546 271 Pfam DnaJ domain 5 68 IPR001623 -
Apr7g1546 271 SUPERFAMILY Chaperone J-domain 5 80 IPR036869 -
Apr7g1546 271 ProSitePatterns Nt-dnaJ domain signature. 48 67 IPR018253 -
Apr7g1546 271 Gene3D - 172 251 - -
Apr7g1546 271 SUPERFAMILY HSP40/DnaJ peptide-binding domain 98 182 IPR008971 GO:0006457|GO:0051082
Apr7g1546 271 Pfam DnaJ C terminal domain 99 251 IPR002939 -
Apr7g1546 271 SMART dnaj_3 4 63 IPR001623 -
Apr7g1546 271 PRINTS DnaJ domain signature 7 25 IPR001623 -
Apr7g1546 271 PRINTS DnaJ domain signature 25 40 IPR001623 -
Apr7g1546 271 PRINTS DnaJ domain signature 43 63 IPR001623 -
Apr7g1546 271 PRINTS DnaJ domain signature 63 82 IPR001623 -
Apr7g1546 271 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 268 - -
Apr7g1546 271 SUPERFAMILY HSP40/DnaJ peptide-binding domain 174 259 IPR008971 GO:0006457|GO:0051082
Apr7g1546 271 Gene3D - 96 170 - -
Apr7g1546 271 ProSiteProfiles dnaJ domain profile. 5 71 IPR001623 -
Apr7g1546 271 CDD DnaJ 5 60 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g1546 Apr-Chr7 22607863 22611666 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g1546 6 70 C2H2 Transcription Factor Family AT1G74250 34.783 3.70e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g1546 K09510 - gmx:100778440 414.075
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g1546 7 22607863 22611666 Apr7g1546 7 22607863 22611666 ECH