Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g1537 ATGAAGGGGAATTGGTTGGAATTGGAGTTGGAGAAGGGAATTGGGGACGCCATTTCTAGAACACGATTCGCTCCTCACTCTAACAACCTCCTCATTTCTTCGTGGGATTCTAGTCTTCGACTTTACGACGTTGACGCTTCCCTCCTCAGACTCGAAGCTCCTTCGCAAGCTCCCCTTCTCGATTGTTGCTTCCAGGACGACGCCGTTGCTTTCACTGCCGCTTCTGATGGACGAATCCGAAGGTATGACTTGCATTTAGGACTTATTGATACAGTGGGTAGCCATGATGATATAGCAACATGTATTGGATATTCCAATGAAACGTGTCAGTTGATCACATCTGGATTTGACAAGAAGCTATTGTTGTGGGATATCCATATGAAGAAGGCTTCTTCGTGCTTGAGAAATCTAGATGCGGAGGTGGATTCCATGTGTGTCTGTGGATTTAATCTTACTGTAGCCATTGGAGCTTCAGTGCATGTTTATGATTTACGTAACTTTGACAAACCAGTTCAGTTAAAGGAGGCATGCAATGGCACGCAATTAAGATGCGTCAGTTCAGTTCCTTATGCAGAAGGATTTGCAGTTGGGTCTGTAGATGGAAGAGTAGCATTGCGGATTTCCTTTTCATCCAGTAATGACATTGGATATGTATTCAGATGTCATCCAAAATCAAAAGATGGGCGCCATTATTTGGTATCAGTGAATGACATCGCATTCAGTCCACTTGTATCTGGTGCTTTTGTCACTGGTGACAATGAAGGCTATGTTACCATATGGGATGCCGGAAGTAGGAAAAGACTAGTTGAGTTGCCCAAGTACCCAAATAGTGTTGCATCCTTATCTTACAACCACGTAGGACAGTTTCTGGCTGTAGCATCAAGCTATACTTACCAAGAAGCAAATGAAATAGAGGAACCACCTCGTGTATTCATCCATAAAGTGGACAGCTTTGATATCGGATCAACTTCTGCTGGAAGCATAACGATGTCGGACGAGGAACACCACTTCGAGTCAAAGGCTGATGCCGGGGCATCAAAGACATTTCCCCAGCAAGCTGGAACCATCCGCAAAAACGGTTACATTGTCATCAAGAACAGGCCATGCAAGGTTGTGGAGGTTTCAACTTCCAAAACTGGCAAGCATGGACATGCAAAGTGTCACTTTGTTGGTATTGACATCTTCACTGGCAAAAAGCTTGAAGATATTGTCCCATCTTCCCATAACTGTGATGTTCCTCATGTCAATCGCACTGACTACCAGCTCATAGATATCTCAGAGGATGGATTTGTGAGTCTGCTGACTGAGACTGGTGGTACTAAGGATGACCTGAGGCTTCCAACCGATGAAAATCTGCTTTCGCAGGTTACAGATCAAGGTAAAGATCTGGTTGTCACTGTTATGTCTTCCATGGGTGAGGAGCAGATTTGTGCCCTTAAGGACATTGGCCCCAAGTGA 1458 0.4465 MKGNWLELELEKGIGDAISRTRFAPHSNNLLISSWDSSLRLYDVDASLLRLEAPSQAPLLDCCFQDDAVAFTAASDGRIRRYDLHLGLIDTVGSHDDIATCIGYSNETCQLITSGFDKKLLLWDIHMKKASSCLRNLDAEVDSMCVCGFNLTVAIGASVHVYDLRNFDKPVQLKEACNGTQLRCVSSVPYAEGFAVGSVDGRVALRISFSSSNDIGYVFRCHPKSKDGRHYLVSVNDIAFSPLVSGAFVTGDNEGYVTIWDAGSRKRLVELPKYPNSVASLSYNHVGQFLAVASSYTYQEANEIEEPPRVFIHKVDSFDIGSTSAGSITMSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTETGGTKDDLRLPTDENLLSQVTDQGKDLVVTVMSSMGEEQICALKDIGPK* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g1537 485 SUPERFAMILY WD40 repeat-like 12 295 IPR036322 GO:0005515
Apr7g1537 485 ProSitePatterns Trp-Asp (WD) repeats signature. 111 125 IPR019775 -
Apr7g1537 485 Gene3D - 2 324 IPR015943 GO:0005515
Apr7g1537 485 Gene3D - 330 414 IPR014722 -
Apr7g1537 485 CDD S1_eIF5A 415 482 - -
Apr7g1537 485 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 414 480 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Apr7g1537 485 Gene3D - 415 484 IPR012340 -
Apr7g1537 485 PANTHER MITOTIC CHECKPOINT PROTEIN BUB3.3 7 321 - -
Apr7g1537 485 PANTHER MRNA EXPORT FACTOR AND BUB3 7 321 - -
Apr7g1537 485 ProSiteProfiles Trp-Asp (WD) repeats profile. 92 125 IPR001680 GO:0005515
Apr7g1537 485 SUPERFAMILY Nucleic acid-binding proteins 415 482 IPR012340 -
Apr7g1537 485 TIGRFAM eIF_5A: translation elongation factor IF5A 347 479 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Apr7g1537 485 SUPERFAMILY Translation proteins SH3-like domain 344 422 IPR008991 -
Apr7g1537 485 SMART eIF_5a_2 414 480 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Apr7g1537 485 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 379 386 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Apr7g1537 485 SMART WD40_4 212 261 IPR001680 GO:0005515
Apr7g1537 485 SMART WD40_4 85 124 IPR001680 GO:0005515
Apr7g1537 485 SMART WD40_4 44 83 IPR001680 GO:0005515
Apr7g1537 485 SMART WD40_4 3 43 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g1537 Apr-Chr7 22533898 22545075 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g1537 330 485 Eukaryotic Initiation Factors Gene Family AT1G13950 85.535 1.11e-93 279
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g1537 K02180 - pop:7498196 696.427
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g1537 7 22533898 22545075 Apr7g1537 7 22533898 22545075 ECH