Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g1515 ATGGGAAGGTCACCATGCTGTGAGAAGAATGGGTTGAAGAAAGGACCATGGACTCCCGAGGAAGACCAAAAGCTCATTGCTTTCATCGAAGAGCATGGCCATGGAAGCTGGCGTGCATTGCCTGCTAAAGCTGGTCTGAGAAGATGTGGAAAGAGCTGCAGATTGAGGTGGACTAATTACCTCCGACCTGATATCAAACGAGGAAAGTTCAGCTTGCAAGAAGAGCAAACCATTATTCAACTTCACGCTCTTCTGGGAAACAGATGGTCAGCAATAGCATCTCACTTACCCAAAAGAACAGACAACGAAATAAAGAACTATTGGAACACTCACCTGAAGAAAAGACTTGACAGAATGGGCATAGATCCCACAACCCACAAGCCTAAACTTGAATCCCTCAAGGACGGCTCCAATCTCAGCCACATGGCTCAATGGGAGAGCGCTCGGCTTGAAGCCGAAGCCAGACTCGTAAGAGAATCAAAGTTAATATTGCTACAACAAAACAAACCCTCTTCCTTCACACAAACTAGGCTGGTTCTCAACAAAATCACCCCTCAACCATCACCACCACCATGCCTCGACGTACTCAAAGCATGCCAAATCAACGACAACAAGAGAACCATGCACATGCCCATACACCATAGCATGTATGCCATGATGCTTTCCACTCATGATCATCATGACCTTGAGTCCCCCACTTCCACGTTGTGCTTCCCCGAGAGTTTGCCAATTATGAATAACGCTAATGCCGTGCCCATGAATGTGATCTCAACCAACAACAACCCCATTGGGTTAATCAATGAGAATTATTATTTACTCCCTCCAACCACTGTCACTACTTCTTCAGAGGGTGGTGCGAATGCAATCATGACGGAAGCTAATGATGGTGGCAGTGAGTATTTAATCAAACACACGGCTGAAGCAGAAGAAAATCAAAAGAGAAATAGTATGTACGATGCAATGTCATGTTTACAAGGTGATGATGATGACATTATGGTGGCTGTTGAAGCATTTAGACGTGCGGGTTACGACAATAATGTCACTCTCACAACTCTCTCAAGCAATGTTGTCGTTGGTTTCGACAACGATATGTCGGTTTTTGGTTCCTACGAAAACTTTGGAGCAGGGAATAACTTGGACAATATCAATGGGAGTGGAAGCACTTGCAGCACTGGTGACGTGAACTTCGAGCATAAGAACTATTGGAATAACTTGCTTGGTTATAAATGA 1230 0.4472 MGRSPCCEKNGLKKGPWTPEEDQKLIAFIEEHGHGSWRALPAKAGLRRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIASHLPKRTDNEIKNYWNTHLKKRLDRMGIDPTTHKPKLESLKDGSNLSHMAQWESARLEAEARLVRESKLILLQQNKPSSFTQTRLVLNKITPQPSPPPCLDVLKACQINDNKRTMHMPIHHSMYAMMLSTHDHHDLESPTSTLCFPESLPIMNNANAVPMNVISTNNNPIGLINENYYLLPPTTVTTSSEGGANAIMTEANDGGSEYLIKHTAEAEENQKRNSMYDAMSCLQGDDDDIMVAVEAFRRAGYDNNVTLTTLSSNVVVGFDNDMSVFGSYENFGAGNNLDNINGSGSTCSTGDVNFEHKNYWNNLLGYK* 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g1515 409 CDD SANT 69 112 IPR001005 -
Apr7g1515 409 CDD SANT 16 61 IPR001005 -
Apr7g1515 409 Gene3D - 13 66 - -
Apr7g1515 409 PANTHER MYB TRANSCRIPTION FACTOR MIXTA-LIKE PROTEIN 1 407 - -
Apr7g1515 409 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Apr7g1515 409 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Apr7g1515 409 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 407 - -
Apr7g1515 409 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Apr7g1515 409 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Apr7g1515 409 SMART sant 66 114 IPR001005 -
Apr7g1515 409 SMART sant 13 63 IPR001005 -
Apr7g1515 409 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Apr7g1515 409 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Apr7g1515 409 Gene3D - 69 116 - -
Apr7g1515 409 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g1515 Apr-Chr7 22345686 22348146 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g1515 1 166 MYB Transcription Factor Family AT3G01140 82.659 2.22e-102 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr7g1515 Myb_DNA-binding 2.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g1515 K09422 - gmx:100792994 491.886
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g1515 7 22345686 22348146 Apr7g1515 7 22345686 22348146 ECH