Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g1505 ATGGCGCTTGTTGGTTTGCTCTTGGTGGGTTTTCTCACAAGGTTTTCGTCTGCCTATGGCTATGGTGGTGGGTGGATCAATGCACATGCTACCTTCTATGGAGGTGGGGCTTGTGGATATGGGAACCTCTACAGCCAAGGGTATGGAACAAACACTGCTGCACTGAGCACAGCTTTGTTCAACAATGGTCTTAGTTGTGGGTCATGCTATGAGATTAGGTGTGTGAATGACCACAGGTGGTGTCTTCCAGGCTCCATTTTGGTCACTGCCACTAATTTCTGCCCACCAAACAATGCCTTGCCTAACAATGCAGGAGGGTGGTGCAACCCTCCTATGCACCACTTTGATCTCTCTCAGCCTGTCTTCTTGCGCATTGCACAATACAGAGCTGGAATTGTGCCTGTGGCATACAGAAGGGTGGCCTGCAGGAGAAGGGGAGGCATAAGGTTCACAATCAATGGTCATTCCTACTTCAACCTAGTCCTCGTAACAAACGTGGGTGGTGCTGGTGATGTGCATGGAGTGGCCATCAAAGGGTCAAGAACTGGGTGGATGCCAATGTCAAGGAACTGGGGTCAGAATTGGCAAAGCAACAACTATCTTAATGGCCAAAGCCTCTCCTTCAAGGTTACCACTAGTGATGGTCGTACTGTGGTCTCCTATAATGTTGCTCCAGCTGGATGGTCTTTTGGCCAAACATACACTGGTGCCCAATTCCGCTAG 723 0.4965 MALVGLLLVGFLTRFSSAYGYGGGWINAHATFYGGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIRCVNDHRWCLPGSILVTATNFCPPNNALPNNAGGWCNPPMHHFDLSQPVFLRIAQYRAGIVPVAYRRVACRRRGGIRFTINGHSYFNLVLVTNVGGAGDVHGVAIKGSRTGWMPMSRNWGQNWQSNNYLNGQSLSFKVTTSDGRTVVSYNVAPAGWSFGQTYTGAQFR* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g1505 240 SUPERFAMILY PHL pollen allergen 144 236 IPR036749 -
Apr7g1505 240 PRINTS Expansin/Lol pI family signature 34 52 IPR007118 GO:0005576
Apr7g1505 240 PRINTS Expansin/Lol pI family signature 56 74 IPR007118 GO:0005576
Apr7g1505 240 PRINTS Expansin/Lol pI family signature 130 146 IPR007118 GO:0005576
Apr7g1505 240 PRINTS Expansin/Lol pI family signature 184 198 IPR007118 GO:0005576
Apr7g1505 240 PRINTS Expansin/Lol pI family signature 222 236 IPR007118 GO:0005576
Apr7g1505 240 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 35 147 IPR007112 -
Apr7g1505 240 PANTHER EXPANSIN 5 239 - -
Apr7g1505 240 Gene3D - 147 239 IPR036749 -
Apr7g1505 240 PANTHER EXPANSIN-A15 5 239 IPR002963 GO:0009664
Apr7g1505 240 Gene3D - 12 143 IPR036908 -
Apr7g1505 240 SMART dpbb_1 52 137 IPR007112 -
Apr7g1505 240 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 157 236 IPR007117 -
Apr7g1505 240 PRINTS Expansin signature 47 61 IPR002963 GO:0009664
Apr7g1505 240 PRINTS Expansin signature 74 85 IPR002963 GO:0009664
Apr7g1505 240 PRINTS Expansin signature 86 96 IPR002963 GO:0009664
Apr7g1505 240 PRINTS Expansin signature 105 122 IPR002963 GO:0009664
Apr7g1505 240 PRINTS Expansin signature 122 135 IPR002963 GO:0009664
Apr7g1505 240 PRINTS Expansin signature 146 158 IPR002963 GO:0009664
Apr7g1505 240 PRINTS Expansin signature 158 179 IPR002963 GO:0009664
Apr7g1505 240 PRINTS Expansin signature 193 214 IPR002963 GO:0009664
Apr7g1505 240 PRINTS Expansin signature 222 238 IPR002963 GO:0009664
Apr7g1505 240 Pfam Expansin C-terminal domain 148 225 IPR007117 -
Apr7g1505 240 SUPERFAMILY Barwin-like endoglucanases 12 165 IPR036908 -
Apr7g1505 240 Pfam Lytic transglycolase 52 137 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g1505 Apr-Chr7 22239167 22241129 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g1505 1 240 Expansin Gene Family AT2G03090 78.629 5.12e-145 404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g1505 - - gmx:100796316 477.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g1505 7 22239167 22241129 Apr7g1505 7 22239167 22241129 ECH
Apr7g1505 7 22239167 22241129 Apr1g0928 1 13070199 13072223 ECH
Apr7g1505 7 22239167 22241129 Apr9g2993 9 36806866 36809111 ECH
Apr7g1505 7 22239167 22241129 Apr6g0206 6 2171435 2172743 ECH