Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g1467 ATGAGCGACCACTTGGTGCTTTTCGTTGACCATCTCGTGCGTCCTGTCCCCGTTGACCCGGTGGCGCAGCCCGCGCAGCTTCCTTCCGAACCCTCTCCGTCTCCGGCCGCTGCGGATGCTGCCGCCGGGACCTCCGGCTCCGCTCCGGCGGCGGAACACGACGGCGAGGGTTGCGATGAGGAGGAGCCGCTGATCCAGATGGCGGAGTGCCGCATCTGCCAGGAGGAGGACGGCGTTTCCAATTTGGAGACGCCCTGTGCCTGTAGCGGTAGTCTTAAGTATGCTCACAGAAAATGTGTTCAGCATTGGTGCAATGAGAAAGGAGACATAACTTGTGAGATATGTCATCAGCCTTATCAACCTGGGTATACTGCCCCCCCACCTCGCCCCAATCCTGAAGAAACTACCATTGATATTGGAGGTGGCTGGACAATATCAGGCACACCTTTGGACTTGCGTGATCCTCGACTCCTGGCAATTGCAGAGGCAGAGCGCCAGTTCTTGGATGCTGAATATGATGAATATGCTGCTTCCAATGCTAGTGGAGCTGCATTTTGCCGCTCAGCTGCTCTAATTTTGATGGCCCTTTTACTCTTGCGGCATGCACTTTCTGTCTCAGATGGTGATTCTTCTGAAGATGATCCTTCCAATTTTTTCTCTCTTTTCTTGCTTCGAGCTGCTGGATTTTTATTACCTTGCTATATTATGGCTTGGGCAATCAGTATTCTGCAACGTCGGCGACAAAGACAGGAGGCTGCAGCACTAGCAGCAACACAAGTTGCTTTTGTTCTACAATCTGGGCAACGTAGAGGTCTACAATTTGCAATAGCACCAGGACCTACCGTACAACAGGAAGAAGTGTAG 864 0.5255 MSDHLVLFVDHLVRPVPVDPVAQPAQLPSEPSPSPAAADAAAGTSGSAPAAEHDGEGCDEEEPLIQMAECRICQEEDGVSNLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQPYQPGYTAPPPRPNPEETTIDIGGGWTISGTPLDLRDPRLLAIAEAERQFLDAEYDEYAASNASGAAFCRSAALILMALLLLRHALSVSDGDSSEDDPSNFFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQEAAALAATQVAFVLQSGQRRGLQFAIAPGPTVQQEEV* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g1467 287 Pfam RING-variant domain 70 115 IPR011016 GO:0008270
Apr7g1467 287 CDD RING_CH-C4HC3_MARCH 70 116 - -
Apr7g1467 287 SMART ringv_2 69 116 IPR011016 GO:0008270
Apr7g1467 287 Coils Coil 158 178 - -
Apr7g1467 287 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 1 279 - -
Apr7g1467 287 SUPERFAMILY RING/U-box 68 120 - -
Apr7g1467 287 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 121 IPR013083 -
Apr7g1467 287 MobiDBLite consensus disorder prediction 21 59 - -
Apr7g1467 287 Pfam Protein of unknown function (DUF3675) 121 240 IPR022143 -
Apr7g1467 287 ProSiteProfiles Zinc finger RING-CH-type profile. 62 122 IPR011016 GO:0008270
Apr7g1467 287 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 279 IPR033275 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g1467 Apr-Chr7 21764214 21768430 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g1467 69 145 C3H Transcription Factor Family AT2G37950 37.079 2.50e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g1467 - - gmx:100779674 456.447
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g1467 7 21764214 21768430 Apr7g1467 7 21764214 21768430 ECH