Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Apr7g1467 | ATGAGCGACCACTTGGTGCTTTTCGTTGACCATCTCGTGCGTCCTGTCCCCGTTGACCCGGTGGCGCAGCCCGCGCAGCTTCCTTCCGAACCCTCTCCGTCTCCGGCCGCTGCGGATGCTGCCGCCGGGACCTCCGGCTCCGCTCCGGCGGCGGAACACGACGGCGAGGGTTGCGATGAGGAGGAGCCGCTGATCCAGATGGCGGAGTGCCGCATCTGCCAGGAGGAGGACGGCGTTTCCAATTTGGAGACGCCCTGTGCCTGTAGCGGTAGTCTTAAGTATGCTCACAGAAAATGTGTTCAGCATTGGTGCAATGAGAAAGGAGACATAACTTGTGAGATATGTCATCAGCCTTATCAACCTGGGTATACTGCCCCCCCACCTCGCCCCAATCCTGAAGAAACTACCATTGATATTGGAGGTGGCTGGACAATATCAGGCACACCTTTGGACTTGCGTGATCCTCGACTCCTGGCAATTGCAGAGGCAGAGCGCCAGTTCTTGGATGCTGAATATGATGAATATGCTGCTTCCAATGCTAGTGGAGCTGCATTTTGCCGCTCAGCTGCTCTAATTTTGATGGCCCTTTTACTCTTGCGGCATGCACTTTCTGTCTCAGATGGTGATTCTTCTGAAGATGATCCTTCCAATTTTTTCTCTCTTTTCTTGCTTCGAGCTGCTGGATTTTTATTACCTTGCTATATTATGGCTTGGGCAATCAGTATTCTGCAACGTCGGCGACAAAGACAGGAGGCTGCAGCACTAGCAGCAACACAAGTTGCTTTTGTTCTACAATCTGGGCAACGTAGAGGTCTACAATTTGCAATAGCACCAGGACCTACCGTACAACAGGAAGAAGTGTAG | 864 | 0.5255 | MSDHLVLFVDHLVRPVPVDPVAQPAQLPSEPSPSPAAADAAAGTSGSAPAAEHDGEGCDEEEPLIQMAECRICQEEDGVSNLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQPYQPGYTAPPPRPNPEETTIDIGGGWTISGTPLDLRDPRLLAIAEAERQFLDAEYDEYAASNASGAAFCRSAALILMALLLLRHALSVSDGDSSEDDPSNFFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQEAAALAATQVAFVLQSGQRRGLQFAIAPGPTVQQEEV* | 288 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Apr7g1467 | 287 | Pfam | RING-variant domain | 70 | 115 | IPR011016 | GO:0008270 | |
Apr7g1467 | 287 | CDD | RING_CH-C4HC3_MARCH | 70 | 116 | - | - | |
Apr7g1467 | 287 | SMART | ringv_2 | 69 | 116 | IPR011016 | GO:0008270 | |
Apr7g1467 | 287 | Coils | Coil | 158 | 178 | - | - | |
Apr7g1467 | 287 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED | 1 | 279 | - | - | |
Apr7g1467 | 287 | SUPERFAMILY | RING/U-box | 68 | 120 | - | - | |
Apr7g1467 | 287 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 65 | 121 | IPR013083 | - | |
Apr7g1467 | 287 | MobiDBLite | consensus disorder prediction | 21 | 59 | - | - | |
Apr7g1467 | 287 | Pfam | Protein of unknown function (DUF3675) | 121 | 240 | IPR022143 | - | |
Apr7g1467 | 287 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 62 | 122 | IPR011016 | GO:0008270 | |
Apr7g1467 | 287 | PANTHER | RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING | 1 | 279 | IPR033275 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Apr7g1467 | Apr-Chr7 | 21764214 | 21768430 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Apr7g1467 | 69 | 145 | C3H Transcription Factor Family | AT2G37950 | 37.079 | 2.50e-08 | 51.6 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Apr7g1467 | - | - | gmx:100779674 | 456.447 |