Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g1466 ATGTTGAAAGTTGACGTAATTGGAAACAAGAAAAGGAAGAGATGTGGGAGGGTTTTCAGGTTCAAGAATTTTGGTGAACCTGGATACCCAGTTATGTTTAGTGGGCCATTTCGTGAGAATGTGAATGCATTACTTGAATATGCGAATTCGGAGAGTAATTTAAGCATTGGAATGCCGATATGGTCTTTTCAACTTGAAGTTCATCACCACCCACCTTTACATATCTTGTTGTTTGTGATTGAAGAGCCAACAGAGGCTGCGCTGAATCGTCACTGCAAGCATTGTCAATACGTTGGCTGGGGCAACCATTTCATATGCAATAAGAAGTATCACTTCCTATTACCCTCAAAGGAGGCACTGGCTACATGCACGAGCTGTGAAGGGTGCTGTGATGCAATTGTTACAATGAATAATGGTAAGTCAAAAATAATTGAATTACAGGGCCATATGATGCATGGTGTTTTTCACTCTAATGGATTCGGGCATTTGCTATGTGTCAATGGCTTGGAAACGGGTTCCAATTTGGCTGGGAACCAGATCATGGAATTTTGGAACCGTTTGTGCAAAGGATTGCAAGCAAAGAAAGTGAGTTTGAATGACATTTCGCAGAAAAGAGGAATGGAACTGAGGCTTGTCAACGGAATAGCATACAGTGAGCCATGGTTTGGTAGATGGGGTTACAAATTTAGTAGAGGATGTTTTGGAGTAACACAATCTATGTACCAAAAGGCCATAGAGGCAATAAGAAGCATGCCACTTTACCTACTCATACACCACATTGGCAATTCCAACCATGACATTCCACTCATATTCTCAAGGTACCAAACACTTTCTGATCAGTCTCTAGTGACCCTTGGTGACCTATTTCGTTACATGTTAGACCTCAAATCACGCCTTCCCCGTGAAACATGCATTGGTTCCTACAACACAAGTGCCTTGATTGAATTCAATTGTCGTTGGTCCCCTAAAAGGATTGAAATGGCAACAAGGGTCATTGTTGAGGCCTTGAAAAGAACAGAATTTAGATGGATTTCAAGGCAAGAAGTTAGAGATGCTGCACGTGCTTACATTGGTGACACTGGTTTGCTAGATTTTGTGTTGAAGTCACTAGGAAACCATGTTGTAGGAAACTACTTGGTTCGGAGAAGCTTGAACCCTGTAACCAAAGTTTTGGAGTATTGCTTAGAAGATATTTCTAATGTGTACCCTTTTAATGAAGGCTTGGTCATGAGCAATAATAATAAAGTTAAGGACAAGTACAAGATCACAAGGGCTCAATTAATGAAGGACATGATTTATTTATACAAGTATATTCTTATAGACACAAAACCAATGATGGGATCAGAATTTCTCTCAGCTATACCGTTGGCAGCTAGGATAATTCTTGACGGCAAGTATTTTATAAAAGATTACTTTGGAGATTTTCCTTATCAAGTTGAATTGGGCTCAGAAGGAAAACTCAACCTTTATTGTACAATTTTGTTGAGGAACAAAGGTGGCCCTGATGAGTATTCTTTTAACAAGGCAATTATGCCACCCTATGAATGTATCACATTGAAAAGTAGTGCTACAATTAATGATTTGAAGATAGAAGTTGAAAGGAATTTCAGAGAAATTTATTGGGGGTTAAGGAGTTTTGTGGTGGAATCAACTGGGAATTTGAATGCCAATAATGGGAATGACATGATTTTGGGGGTAATTGAAGTGGGTGGAAAAGTTGTACTAGAGGGTTGGCAAGGGGGTGACATGGGCATAAACATGATTGAGCAAATATGTGAATGTGATCCTAACAATGGCATTGTGGATTGCACTTGTGGAACTAAAGAAGATGATGGTGAGAGGATGGTAACGTGTGATATTTGTGAAATTTGGCAGCACACAAGGTGTGTTCGCATTCCTAATGATGAAGAAATTCCCCATATTTTTCTGTGCAAAAGGTGCGAGCAAGAAATTGTTCTGTTCCCTTCTTTGCCGTAG 1977 0.3976 MLKVDVIGNKKRKRCGRVFRFKNFGEPGYPVMFSGPFRENVNALLEYANSESNLSIGMPIWSFQLEVHHHPPLHILLFVIEEPTEAALNRHCKHCQYVGWGNHFICNKKYHFLLPSKEALATCTSCEGCCDAIVTMNNGKSKIIELQGHMMHGVFHSNGFGHLLCVNGLETGSNLAGNQIMEFWNRLCKGLQAKKVSLNDISQKRGMELRLVNGIAYSEPWFGRWGYKFSRGCFGVTQSMYQKAIEAIRSMPLYLLIHHIGNSNHDIPLIFSRYQTLSDQSLVTLGDLFRYMLDLKSRLPRETCIGSYNTSALIEFNCRWSPKRIEMATRVIVEALKRTEFRWISRQEVRDAARAYIGDTGLLDFVLKSLGNHVVGNYLVRRSLNPVTKVLEYCLEDISNVYPFNEGLVMSNNNKVKDKYKITRAQLMKDMIYLYKYILIDTKPMMGSEFLSAIPLAARIILDGKYFIKDYFGDFPYQVELGSEGKLNLYCTILLRNKGGPDEYSFNKAIMPPYECITLKSSATINDLKIEVERNFREIYWGLRSFVVESTGNLNANNGNDMILGVIEVGGKVVLEGWQGGDMGINMIEQICECDPNNGIVDCTCGTKEDDGERMVTCDICEIWQHTRCVRIPNDEEIPHIFLCKRCEQEIVLFPSLP* 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g1466 658 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 8 658 - -
Apr7g1466 658 SUPERFAMILY FYVE/PHD zinc finger 594 650 IPR011011 -
Apr7g1466 658 CDD PHD_MMD1_like 602 647 - -
Apr7g1466 658 SMART PHD_3 602 648 IPR001965 -
Apr7g1466 658 Pfam PHD-finger 603 649 IPR019787 -
Apr7g1466 658 PANTHER PHD FINGER PROTEIN MALE STERILITY 1 8 658 - -
Apr7g1466 658 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 596 653 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g1466 Apr-Chr7 21758553 21762202 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g1466 10 658 PHD Transcription Factor Family AT5G22260 51.484 0.0 665
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Apr7g1466 PHD 9.6e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g1466 - - gmx:100780210 1213.36