Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g1459 ATGGCTTCTGAGCCAGAGGTAGCCGATCTCTCCTCTGTTTTTGAAAGGCTTGTGCAAAACAGAGACATGACTCTGTTTTTGCCCTTTCTCTTTGGCCTCTCAGAGACCTCCCCAAGGGGAAACAACGAAGACCCAGATCACGAAACTGGGAGCACTGATGGTTCCCAGCGTGAAAGAATAATCTTGGTGAACCCCTTTACACAGGGCATGGTGGTCATTGATGGAGCTTCAAGCCTTGAAGCTCTGTTACGTGAGCTTGGGAGTGTGAAGAGTGGTCGACCACCGGCTTCAAAGGAATCGATAGAGGCCATGCCAAGTGTGGAAATTGGAGAAGAAAGTGAGGGTTTGGAGTGTATTGTGTGTTTGGAAGAGTTTGAGATTGGTGGGGTGGTAAAAGAAATGCCTTGTAAGCATAGGTTTCACCATAATTGCATTGAGAAGTGGTTGGGGATTCATGGTTCTTGCCCTGTTTGTAGGTATGACATGCCTGTTGATGAGGGGAAGAAGAGGGATGAAGAAGGGGGAGAGAGAAGGAGGGTTGGTGGGGGTGAAGTTTGGGTTAGTTTTTCTTTCAATAGGAGTAGGAGCAGCGATGATCCAAATGATACTCCTGGTAATTCTAATGATTCTTTATCATCAAGTCCCGAAGGTGACGCTGAGGTAGAGAGTTAG 672 0.4717 MASEPEVADLSSVFERLVQNRDMTLFLPFLFGLSETSPRGNNEDPDHETGSTDGSQRERIILVNPFTQGMVVIDGASSLEALLRELGSVKSGRPPASKESIEAMPSVEIGEESEGLECIVCLEEFEIGGVVKEMPCKHRFHHNCIEKWLGIHGSCPVCRYDMPVDEGKKRDEEGGERRRVGGGEVWVSFSFNRSRSSDDPNDTPGNSNDSLSSSPEGDAEVES* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g1459 223 MobiDBLite consensus disorder prediction 191 217 - -
Apr7g1459 223 MobiDBLite consensus disorder prediction 191 223 - -
Apr7g1459 223 SUPERFAMILY RING/U-box 112 165 - -
Apr7g1459 223 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 165 IPR013083 -
Apr7g1459 223 Pfam Ring finger domain 117 159 IPR001841 -
Apr7g1459 223 ProSiteProfiles Zinc finger RING-type profile. 118 159 IPR001841 -
Apr7g1459 223 PANTHER - 9 171 - -
Apr7g1459 223 MobiDBLite consensus disorder prediction 37 58 - -
Apr7g1459 223 MobiDBLite consensus disorder prediction 40 54 - -
Apr7g1459 223 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 9 171 - -
Apr7g1459 223 SMART ring_2 118 158 IPR001841 -
Apr7g1459 223 CDD RING-H2_PA-TM-RING 117 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g1459 Apr-Chr7 21699892 21700935 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g1459 1 213 C3H Transcription Factor Family AT1G26800 53.211 2.44e-65 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g1459 - - lang:109356689 276.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g1459 7 21699892 21700935 Apr7g1459 7 21699892 21700935 ECH