Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g1451 ATGGAAAATTTGTACAATGTCCTCCTTCTAACGTGCTTTTTAGTCCTAATACCTACCTTGCATGCCAATGTCAAAGAGGATAGTGGGTATTGGGAAAAGCACGAGGAAGTGCTTGATTCATATTGGATTCAAAGAGCATCAGATGCTGAAAAAGTGAACCAGGGAGCTTATTATTCTGACCCTTATGCACTCACCAGCAACCTGACTTCTAGTGTTAGCCAGCTTATAATTGGTGATAAGAAGGAAAGAAGAAAGTTGGGTTCAAAATCAGGAAGTGATCAATGCCTGGCAACAAACCCTATTGACAGGTGCTGGAGGTGTGACCCTAATTGGGCAAACAACCGCAAGAAGCTTGCAGATTGTGTGCAGGGTTTTGGCAGAAACACTATTGGTGGAAAGAATGGTGAATTTTATGTGATAACCGATCCTTCAGATAATGACATGGTGAATCCAGTTCCTGGTACCCTTAGGCATGCAGTTACACGAAATGTACCCTTGTGGATCATCTTTGCTCGTAGCATGACCATTAGGCTCAATCAAGAACTCATAATGAATAGTAACAAGACCATTGATGGAAGAGGAGTTGATGTTTACATTACCAATGGAGCTGGTATTACCATCCAGTATATCAGCAATGTGATCATTCATGGAATTAAGGTTTTTAACATTGTGTCTGGCACTGGTGGACTTGTTAGAGATTCTGCGAACCATTATGGTATAAGGACTAGGAGTGATGGGGATGGAATTTCCATCTTTGGCGCTAGCAATATTTGGATTGACCATGTTTCCATGAGAAACTGCGTGGATGGACTGATAGATGTCATTCAGGGTTCCACTGCTATTACCATCTCTAATAGCCATTTCACAGACCACAATGAGGCGATGCTGTTTGGTGCTCGTGACAACTATGATACTGATAGCATTATGCAGATCACTGTGGCATTCAACCACTTTGGTAAGAGATTAATCCAAAGGATGCCAAGGTGTAGATATGGCTTTGTCCATGTGGTTAACAACGATTACACCCATTGGGAAATGTATGCCATCGGTGGTAGCAAGCACCCTACCATTATTAGCGAGGGGAACCGGTTTATTGCCCCTAACAACAATAATGCAAAGGAGATAACGAAGAGGGAATATGCACCAGAATCAGAATGGAAAACCTGGCAATGGAGATCAATCAACGATGTGTACTTGAATGGAGCATTTTTCAGAGAAGGTGGAACTGAGCTAACCAACAGGCCATTTTCAAGGAAGGATATGATTACAGCGAAGCCTGGCTCTTATGTGGGAAGGCTCACTCGCTATGCTGGTAGCCTTAAATGCGTAGTGGGTAAACCATGTTAG 1347 0.4269 MENLYNVLLLTCFLVLIPTLHANVKEDSGYWEKHEEVLDSYWIQRASDAEKVNQGAYYSDPYALTSNLTSSVSQLIIGDKKERRKLGSKSGSDQCLATNPIDRCWRCDPNWANNRKKLADCVQGFGRNTIGGKNGEFYVITDPSDNDMVNPVPGTLRHAVTRNVPLWIIFARSMTIRLNQELIMNSNKTIDGRGVDVYITNGAGITIQYISNVIIHGIKVFNIVSGTGGLVRDSANHYGIRTRSDGDGISIFGASNIWIDHVSMRNCVDGLIDVIQGSTAITISNSHFTDHNEAMLFGARDNYDTDSIMQITVAFNHFGKRLIQRMPRCRYGFVHVVNNDYTHWEMYAIGGSKHPTIISEGNRFIAPNNNNAKEITKREYAPESEWKTWQWRSINDVYLNGAFFREGGTELTNRPFSRKDMITAKPGSYVGRLTRYAGSLKCVVGKPC* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g1451 448 SMART amb_all 173 370 IPR002022 -
Apr7g1451 448 Pfam Pectate lyase, N terminus 38 86 IPR007524 GO:0030570
Apr7g1451 448 PANTHER PECTATE LYASE 18-RELATED 6 448 IPR045032 GO:0030570
Apr7g1451 448 Pfam Pectate lyase 182 364 IPR002022 -
Apr7g1451 448 PRINTS Pollen allergen Amb family signature 121 138 IPR018082 -
Apr7g1451 448 PRINTS Pollen allergen Amb family signature 145 170 IPR018082 -
Apr7g1451 448 PRINTS Pollen allergen Amb family signature 181 197 IPR018082 -
Apr7g1451 448 PRINTS Pollen allergen Amb family signature 245 266 IPR018082 -
Apr7g1451 448 PRINTS Pollen allergen Amb family signature 325 344 IPR018082 -
Apr7g1451 448 PRINTS Pollen allergen Amb family signature 347 366 IPR018082 -
Apr7g1451 448 PRINTS Pollen allergen Amb family signature 389 413 IPR018082 -
Apr7g1451 448 PRINTS Pollen allergen Amb family signature 419 442 IPR018082 -
Apr7g1451 448 PANTHER PECTATE LYASE 6 448 - -
Apr7g1451 448 Gene3D - 98 441 IPR012334 -
Apr7g1451 448 SUPERFAMILY Pectin lyase-like 99 438 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g1451 Apr-Chr7 21632980 21635041 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g1451 5 448 Polysaccharide Lyase AT1G14420 58.696 0.0 539
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g1451 K01728 - gmx:100796307 758.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g1451 7 21632980 21635041 Apr7g1451 7 21632980 21635041 ECH
Apr7g1451 7 21632980 21635041 Apr1g0891 1 11975435 11978033 ECH
Apr7g1451 7 21632980 21635041 Apr6g0179 6 1751575 1753861 ECH