Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g1446 ATGGAGCAACGCGCGTTAATAGACCGATCCTTCGACGATCGTTACTCGCGGGACGCGCGCGACTCGCTCGACGAGTTGCGTCATAACTTCATCATCACCGACCCTTCTATCCCGGGCCACCCTATCGTCTTCGCTAGCCTTGACTTCCTCAAGATGACGGGCTACACGCGCCATGAAGTATTGGGCCGGAGTGGGTCCATGTTTCAGGGCCCGCGAACTTCTAGAAGGTCCGTCATGGAGATTCGAGAGGCCGTTCGCGAGGAACGAAACGCGCAGGTCGTTTTGCTTAACTACCGAAAGGACGGCACGCCGTTTTGGATGCTCTTTCGTGTTTGCCCCGTTTTCAGCAGAGACGGTGGTGCCGTCGTTCACTTCGTCGCCGTTCAGGTTCCGCTTCAGGGGAAGGGTTTGTCGCAGGATGGATCTGGTTCGCGGGATTTTGGGTTCGGGTGCTGTCGGAAGGAGGTGTGCTCTGATTCGTTGACGGAACTTGGTCGCGTTTGTTCGTTGAATCAAGTGTTGGAACGTGATGTCAGAGAATTGGAGAGTGAAGAGCCGTGTGAGGCAAGTGATGATGAGAAGACAAGTGCTGTTACTGCTATGGACAACATCTTTTCTGTGCTAACCCATTATAGTGAGTGGACGGGCAGATTGGTTTGTAGAAAGAGATGTAGTTTTCCTGACGTGGGTCTTTTAAGCACATCCTTGATTATTTCTCTTGGTAGAATCAAACAAAGCTTTGTATTAACTAATCCGCATTTACCAGACATGCCTATCGTTTATGCCAGTGATGCCTTCTTGAAATTGACAGGTTATGCAAGGGATGAAGTCTTGGGCCGCAACTGTAGAATTTTAGGTGGAACAAATACTGATACCTCAACTTTACATCTGATTAGAGAAAGCATTAAAACTGAACAACCATGCACAGTACGTATTTTGAATTACAGGAAGGATAGAAGCTCATTTTGGAATTTTCTTCACATCTCACCTGTTCGAGATGCTTCTGGCAAGGTAGCCTACTTTGTGGGAGTTCAAATAGAAGATGACAATAACAACGATGATAGAAATAGAAAGTGTTTGAGTCCTGAGAGGAGGCAGCTTAGCGTGGTTGGTGTTGTAAAGGTTGCAGTGAGGAGTTTATCAGCTGGATCTTCGAAATCATAG 1164 0.4777 MEQRALIDRSFDDRYSRDARDSLDELRHNFIITDPSIPGHPIVFASLDFLKMTGYTRHEVLGRSGSMFQGPRTSRRSVMEIREAVREERNAQVVLLNYRKDGTPFWMLFRVCPVFSRDGGAVVHFVAVQVPLQGKGLSQDGSGSRDFGFGCCRKEVCSDSLTELGRVCSLNQVLERDVRELESEEPCEASDDEKTSAVTAMDNIFSVLTHYSEWTGRLVCRKRCSFPDVGLLSTSLIISLGRIKQSFVLTNPHLPDMPIVYASDAFLKLTGYARDEVLGRNCRILGGTNTDTSTLHLIRESIKTEQPCTVRILNYRKDRSSFWNFLHISPVRDASGKVAYFVGVQIEDDNNNDDRNRKCLSPERRQLSVVGVVKVAVRSLSAGSSKS* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g1446 387 SUPERFAMILY PYP-like sensor domain (PAS domain) 31 127 IPR035965 -
Apr7g1446 387 CDD PAS 255 344 IPR000014 -
Apr7g1446 387 PANTHER PROTEIN TWIN LOV 1 7 385 - -
Apr7g1446 387 TIGRFAM sensory_box: PAS domain S-box protein 42 123 IPR000014 -
Apr7g1446 387 TIGRFAM sensory_box: PAS domain S-box protein 259 344 IPR000014 -
Apr7g1446 387 SMART pac_2 92 135 IPR001610 -
Apr7g1446 387 SMART pac_2 309 351 IPR001610 -
Apr7g1446 387 ProSiteProfiles PAS repeat profile. 15 88 IPR000014 -
Apr7g1446 387 CDD PAS 42 128 IPR000014 -
Apr7g1446 387 ProSiteProfiles PAS repeat profile. 259 281 IPR000014 -
Apr7g1446 387 Gene3D PAS domain 246 382 - -
Apr7g1446 387 Gene3D PAS domain 29 146 - -
Apr7g1446 387 Pfam PAS domain 38 129 IPR000014 -
Apr7g1446 387 Pfam PAS domain 246 345 IPR000014 -
Apr7g1446 387 PANTHER PROTEIN TWIN LOV 1 7 385 - -
Apr7g1446 387 SUPERFAMILY PYP-like sensor domain (PAS domain) 249 345 IPR035965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g1446 Apr-Chr7 21587350 21591683 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g1446 225 362 AGC Kinase Gene Family AT5G58140 39.130 4.94e-28 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g1446 - - gmx:100785562 624.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g1446 7 21587350 21591683 Apr7g1446 7 21587350 21591683 ECH