Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g1443 ATGGCAGGTGGCAAGCTTTATGGTGCCTCAAACATGTCACTTCTCCTCCAAAATGAAAGACTCCCCTGCTCCTCTGAAGTCCTCGAGTCTCTCTGGGCTCACACCTCTAACCCTCCCTCTTTCCAAGGTTCAAAGTCGGTGGTTGATTTTGAGAATGTTAATGGGAGCAGGGTGGTGGATAGGCCCTTCTTTCAAGCGCTTGAGAAGGAAGAGAACGGTGATGAGGATTATGATGGGTGTTTCCATCAACCGGGAAAGAAAAGAAGGCTCACAAGTGAACAAGTTCAGTTCCTTGAAAGGAACTTCGAGGTAGAGAACAAGCTTGAACCTGAAAGGAAGGTTCAACTTGCAAAGGAGCTTGGCTTGCAGCCAAGGCAAGTTGCTATATGGTTCCAAAACAGAAGGGCAAGGTTCAAGACCAAACAGCTAGAAAAAGACTATGGCACATTGAAAGCTAGTTATGACAGACTCAAAGGTGACTATGAAAATCTTCTTCAAGAGAATGACAAGTTAAAAGAAGAGGTGAATTCTCTCAAGAACAAGTTGATTCCTAGAGATAAAGAGGAGGAGAATTCAGATGACAAGTCATCTCCTGATGCTGTCAATTCACCCCACAAAGAGCCTATGGATTTAATTTCAAATGCAACATCTGAAAATGGGTCTAAAGTGTCACTCCCTATTATGGTAACATGCAAGCAAGAAGATGCCAATTCAGCTAAAAGTGATGTGCTTGATTCGGACAGCCCACATTGCACTGATGGGAACCATCCTTCCTCATTTGTGGAGCCTGCAGATTCTTCCCATGCTTTTGAACCAGATCAGTCAGATTTCTCCCAGGATGAAGAGGATAACCTTAGTGAAAACCTTTTGACCCTCCCTTGCTTACCAAAGGTTGAAGATGCCTGTTATGACGACCCTCCTGAAAACTCTTGTAATTTTGGCTTCCAGGTTGAAGATCAAACCTTCTGTTTCTGGCCCTTCTGA 984 0.4411 MAGGKLYGASNMSLLLQNERLPCSSEVLESLWAHTSNPPSFQGSKSVVDFENVNGSRVVDRPFFQALEKEENGDEDYDGCFHQPGKKRRLTSEQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARFKTKQLEKDYGTLKASYDRLKGDYENLLQENDKLKEEVNSLKNKLIPRDKEEENSDDKSSPDAVNSPHKEPMDLISNATSENGSKVSLPIMVTCKQEDANSAKSDVLDSDSPHCTDGNHPSSFVEPADSSHAFEPDQSDFSQDEEDNLSENLLTLPCLPKVEDACYDDPPENSCNFGFQVEDQTFCFWPF* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g1443 327 MobiDBLite consensus disorder prediction 179 219 - -
Apr7g1443 327 ProSiteProfiles 'Homeobox' domain profile. 81 141 IPR001356 GO:0003677
Apr7g1443 327 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 327 IPR045224 GO:0003700
Apr7g1443 327 SUPERFAMILY Homeodomain-like 75 143 IPR009057 -
Apr7g1443 327 MobiDBLite consensus disorder prediction 238 284 - -
Apr7g1443 327 Pfam Homeodomain 86 139 IPR001356 GO:0003677
Apr7g1443 327 SMART HOX_1 83 145 IPR001356 GO:0003677
Apr7g1443 327 ProSitePatterns 'Homeobox' domain signature. 116 139 IPR017970 GO:0000981|GO:0006355
Apr7g1443 327 Pfam Homeobox associated leucine zipper 141 182 IPR003106 GO:0006355|GO:0043565
Apr7g1443 327 Gene3D - 137 183 - -
Apr7g1443 327 CDD homeodomain 84 142 IPR001356 GO:0003677
Apr7g1443 327 Coils Coil 147 181 - -
Apr7g1443 327 MobiDBLite consensus disorder prediction 179 201 - -
Apr7g1443 327 PANTHER HOMEOBOX LEUCINE ZIPPER FAMILY PROTEIN 1 327 - -
Apr7g1443 327 PRINTS Lambda-repressor HTH signature 112 121 IPR000047 GO:0003677
Apr7g1443 327 PRINTS Lambda-repressor HTH signature 121 137 IPR000047 GO:0003677
Apr7g1443 327 Gene3D - 65 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g1443 Apr-Chr7 21542173 21544138 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g1443 43 273 Homeobox Transcription Factor Family AT3G01470 42.918 8.13e-45 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Apr7g1443 Homeodomain 3.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g1443 - K09338 adu:107489132 447.203
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g1443 7 21542173 21544138 Apr7g1443 7 21542173 21544138 ECH
Apr3g0871 3 22732593 22734442 Apr7g1443 7 21542173 21544138 PCT