Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g1390 ATGGCGATGATGCAAGGGGTGCAGAAGAACACGCTATACGTGGGAGGGTTAGCGGAGGAAGTGAACGAGTCCATTCTCCACGCCGCGTTCATTCCGTTCGGCGATATCAAAGACGTGAAAACGCCGCTCGACCAAGCCACTCAGAAGCACCGTTCCTTCGGCTTCGTCACCTTTCTCGAGAGGGAAGACGCCACCGCCGCCATGGACAACATGGACGGCGCCGAGCTCTACGGTCGCGTCCTCACCGTCAATTACGCCCTCCCCGAACGCATTAAGGGTGGCGAGCAGGGCTGGGCCGCTCAACCTATTTGGGCGGATGCTGATACTTGGTTTGAGCGGCAGCAGCAAGAGGAGGAGATGCGTCGACTTGAAGCAGAAAATCGAGCTGCAATGCAGGCTGCAGAAGACTTGCGTAGGAAACAAGTAGCACAAGAGCGAGAAGGAGAAAAAGAAGAGGAAATTGAGATCAAGGATGACCCCATGGCAAAGGCTGAAGCAGAGGTTCTTCAACAGAATAACCAATAA 525 0.5467 MAMMQGVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEREDATAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMRRLEAENRAAMQAAEDLRRKQVAQEREGEKEEEIEIKDDPMAKAEAEVLQQNNQ* 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g1390 174 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 88 IPR000504 GO:0003723
Apr7g1390 174 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE E 5 173 - -
Apr7g1390 174 PANTHER TRANSFORMER-2-RELATED 5 173 - -
Apr7g1390 174 SUPERFAMILY RNA-binding domain, RBD 8 97 IPR035979 GO:0003676
Apr7g1390 174 SMART rrm1_1 11 84 IPR000504 GO:0003723
Apr7g1390 174 Coils Coil 113 147 - -
Apr7g1390 174 CDD RRM_PPIE 12 84 IPR034168 GO:0003723
Apr7g1390 174 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 81 IPR000504 GO:0003723
Apr7g1390 174 MobiDBLite consensus disorder prediction 128 162 - -
Apr7g1390 174 Gene3D - 3 153 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g1390 Apr-Chr7 21043656 21045570 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g1390 10 88 Eukaryotic Initiation Factors Gene Family AT3G11400 37.975 4.15e-11 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g1390 - K09564 ccaj:109797476 309.686