Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g1383 ATGAACCACGAAGAGAAAGTCACCATGGACCTTGTTCCACCATCTGAACACCTCTGCTACGTTCGTTGCAACTTCTGTAACACTGTTCTCGCGGTTGGCATACCATGCAAGAGGCTATTAGACACTGTGACAGTGAAGTGTGGTCACTGTAGCAACCTATCCTTTCTGAGCACCAGACCCCCAAATTCTCAACATCAAACCATTGATCACACCCTTAGTCTCCAGGGGTTTTACTGTATTGCCAAAAAGGGACAAGCGTCGTCTTCATCTTCCTCGCCAACTACATCTAACGAGTCAGTGTCCCCAAAAGCAGCACCATTTGTTGTAAAACCACCTGAGAAGAAGCACCGTCTCCCATCTGCTTATAACCGTTTCATGAAGGAGGAGATACAGCGCATCAAAGCAGCCAACCCTCAGATCCCACATCGAGAAGCTTTCAGTGCTGCAGCGAAAAATTGGGCTAGGTTCATTCCGAATTCGCCAACCAGTTCAGTTTCCGCGAGTAAAAATAATGTAAGATCATATGGAGATGGACTTTATGCCAGCATGTAG 552 0.4674 MNHEEKVTMDLVPPSEHLCYVRCNFCNTVLAVGIPCKRLLDTVTVKCGHCSNLSFLSTRPPNSQHQTIDHTLSLQGFYCIAKKGQASSSSSSPTTSNESVSPKAAPFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPQIPHREAFSAAAKNWARFIPNSPTSSVSASKNNVRSYGDGLYASM* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g1383 183 MobiDBLite consensus disorder prediction 86 102 - -
Apr7g1383 183 SUPERFAMILY HMG-box 101 154 IPR036910 -
Apr7g1383 183 PANTHER PROTEIN YABBY 6-RELATED 6 171 IPR006780 GO:0007275
Apr7g1383 183 PANTHER PROTEIN CRABS CLAW 6 171 - -
Apr7g1383 183 MobiDBLite consensus disorder prediction 86 115 - -
Apr7g1383 183 CDD HMGB-UBF_HMG-box 117 153 - -
Apr7g1383 183 Gene3D High mobility group box domain 90 162 IPR036910 -
Apr7g1383 183 Pfam YABBY protein 14 156 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g1383 Apr-Chr7 20951295 20952987 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g1383 1 178 C2C2-YABBY Transcription Factor Family AT1G69180 62.983 3.62e-68 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Apr7g1383 YABBY 1.5e-55 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g1383 K25796 - gmx:100819079 321.627
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g1383 7 20951295 20952987 Apr7g1383 7 20951295 20952987 ECH
Apr7g1383 7 20951295 20952987 Apr7g1646 7 23605841 23607914 PCT