Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g1350 ATGAGTGACAAAGAAAAGTTTGAGCTAGATAGAAACGAGGATCCTATGAGTTATTCTACTGGTTTGCCTTCGGATTGGAGATTTGGAGGTGCCAATCTTGCAAATTCTTCTGTAGGTTTGGTTGCTATGGGAAATTCTATGAATGTAAGCAGAGGGGATTTGATTGGTTCTTCTTCATGTTCCTCTGCTTCAATGGTGGACTCATTTGGTCCAAACTTCTGGGACCATTCCACCACTTCCCAAAACATGGGATTTTGTGACATTAGTAATGTTCACAATAATGGGAGTTCTTCAAACACAGGTGGAATCAGAAAAGAAAGCTTTGGATTTGGAAGGGCTGGTCAGGATCATCACGGAACACTTGAGATGGGTTGGAACCCTGCAAATTCTATGTTGAAAGGGGATGGTTTTTTACCAAATGGACCAGGGATGTTTCCTCAGAGTTTATCTCAGTTTCCAACTGATTCTGGATTCATTGAGAGAGCTGCAAGATTCTCATGTTTCAGTGGAGGGAACTTTGGTGATATGGTGAACTCATATGGGATTCCTCAATCCATGAATCTGTATGCTGGGAGTGGTGGCACAATGCATGGAACAAGGGATGCTCCTGCAGGCCATGGGTTAAAATCAGTAACTGTAGGACAATCTCAGGAAAGTGATCTCAATGTGGTGGAAGCCACAAAAGATGTTCCTTCATCTGTTGAGCATTTGACTCCTAAAGGAAGCCCTCTCAAGAATGATAAAAGAAGTGAAAATCATGCTGTATCTCAAGATGAAGGGAAGCAAGCCCTTGTTAGGTCAGCTAATGAGTCTGATAGAGCTGAATCTAGTGATGATGGTGGCGGCCAGGATGATTCTCCAATGCTGGAGGGTACTAGTGAGGAACCTTCCATCAAAGGACTAAAGAAAAGGAAAAGAAGTGGACAGGATGTTGATAATGATAAAGCCAATGGAGCTCCAGAGTTACCAAGTGAAGGTGCAAAGGACAATTCAGAGTGTCAACAGAAGGGAGAACAACAACCAACTTCAACAACAAAGGCTTCTGGGAAGAATGGCAAACCGGGGTCTCAAGCGTCTGATCCTCCCAAGGAGGAATACATACACGTTCGAGCTCGCCGGGGTCAAGCAACCAATAGCCATAGCCTTGCAGAGAGAGTGAGGAGGGAAAAGATCAGTGAGAGGATGAAATTTCTTCAAGACCTTGTACCTGGATGCAGCAAGGTCACTGGCAAGGCGGTAATGCTTGATGAAATCATCAATTATGTACAGTCACTTCAACGACAGGTTGAGTTTTTGTCTATGAAACTTGCAACAGTAAATCCGCGACTTGATTTTAATATTGAAGGACTTCTTGCTAAAGATATTCTTCAACAACGGCCCGGTCCTTCATCTGCACTAGGGTTTCCTCTAGAGATGTCTATGGCTTTTCCTCCATTACATCCACCTCAACCAGGGATGATTCAGCCAATTATTCCAAACATGCCAAACTCATCAGATATCCTTCGAAGAACCATTCATCCACAGTTAGCACCCTTGAGTGGAGGATTCAAGGAACCAAATCAGCTGCCTGATGTATGGGAGGATGAGCTTCACAATGTTGTACAAATGAGCTTTGCAACAACTGCACCCCTGAGTAGCCAAGATGTTGATGGTAATGGTACTGTGCCAGCAAATCAGATGAAAGTTGAACTTTGA 1695 0.4366 MSDKEKFELDRNEDPMSYSTGLPSDWRFGGANLANSSVGLVAMGNSMNVSRGDLIGSSSCSSASMVDSFGPNFWDHSTTSQNMGFCDISNVHNNGSSSNTGGIRKESFGFGRAGQDHHGTLEMGWNPANSMLKGDGFLPNGPGMFPQSLSQFPTDSGFIERAARFSCFSGGNFGDMVNSYGIPQSMNLYAGSGGTMHGTRDAPAGHGLKSVTVGQSQESDLNVVEATKDVPSSVEHLTPKGSPLKNDKRSENHAVSQDEGKQALVRSANESDRAESSDDGGGQDDSPMLEGTSEEPSIKGLKKRKRSGQDVDNDKANGAPELPSEGAKDNSECQQKGEQQPTSTTKASGKNGKPGSQASDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFNIEGLLAKDILQQRPGPSSALGFPLEMSMAFPPLHPPQPGMIQPIIPNMPNSSDILRRTIHPQLAPLSGGFKEPNQLPDVWEDELHNVVQMSFATTAPLSSQDVDGNGTVPANQMKVEL* 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g1350 564 Gene3D - 372 445 IPR036638 GO:0046983
Apr7g1350 564 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 375 425 IPR011598 GO:0046983
Apr7g1350 564 MobiDBLite consensus disorder prediction 198 362 - -
Apr7g1350 564 CDD bHLH_AtBPE_like 365 450 - -
Apr7g1350 564 MobiDBLite consensus disorder prediction 544 564 - -
Apr7g1350 564 SMART finulus 381 431 IPR011598 GO:0046983
Apr7g1350 564 MobiDBLite consensus disorder prediction 328 355 - -
Apr7g1350 564 PANTHER BHLH TRANSCRIPTION FACTOR 10 563 - -
Apr7g1350 564 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 373 444 IPR036638 GO:0046983
Apr7g1350 564 MobiDBLite consensus disorder prediction 241 256 - -
Apr7g1350 564 MobiDBLite consensus disorder prediction 265 280 - -
Apr7g1350 564 Pfam Helix-loop-helix DNA-binding domain 378 426 IPR011598 GO:0046983
Apr7g1350 564 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 10 563 IPR024097 GO:0006355
Apr7g1350 564 MobiDBLite consensus disorder prediction 296 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g1350 Apr-Chr7 20590014 20594318 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g1350 56 538 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68920 47.119 3.08e-118 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr7g1350 HLH 7.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g1350 - - gmx:100797720 915.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g1350 7 20590014 20594318 Apr7g1562 7 22708925 22711695 PCT