Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g1304 ATGGAGAAAGATCACAACTATTCGGCACCACCCAGCATGCCCCCAAGTTTCAACACACTTGATTACTCTCTCGATCATCATCAACTCCATTTGTACCCACAAAATCAACAACACCAGCATCTCATGAAGTTCCAAACTTCGGATGTGATGCAGTTTGCAGATTTTGGACCCAAGTTGGCCTTAAACCAAGCCAAGAACTGCGAAGAATCTGGAATAGACCCAGTTTACTTCCTCAAGTTTCCTGTGTTAAATGACGATAAGATGGAGGAAGATCAGAACATGATGATGAATAATAACACTGATGGTGGTGATGGGGAAGCTGAAAATGATGCTGAGAGGTTCAACTTGGTGAGTGTGGAAGATAAGTGTAGGTTAGTAGGAGAAGAGGGAATGATGAGAGAAGACGAAGAGACTCGGGTTTCTGATGACAACAACTCAGTGCAACTTCGGTTTCTTGGTCATGAGGACCTACACAAGAATTCTTCTACAGTTCAAGAGAACAAGAACAAGAGGAAGAGACCAAGAACTGTTAAGACAAGTGAAGAAGTTGAGAGCCAGCGCATGACTCACATAGCGGTTGAAAGGAACCGAAGGAAGCAAATGAATGAGCATCTTCGTGTCCTTAGGTCACTCATGCCCGGTTCATACGTCCAAAGGGGTGATCAAGCTTCTATAATTGGGGGGGCTATAGAGTTTGTGAGGGAATTGGAGCAACTTCTTCAGTGTTTGGAATCACAAAAGAGGAGGAGACTCCTTGGAGAAGCTCAAGCAAGACAAGTTGGAGATCCAACTCTTACAGCACAACAGCCTCCATTCTTTCCACCTTTGCCTTTGCCAAATGACCAGATGAAGCTTGTGGAGATGGAGACCGGACTTCACGAAGAAACCGCGGAGAGCAAGTCTTGTTTGGCTGATGTTGAAGTGAAGCTTCTAGGATTTGATGCTATGATCAAAATCCTATCAAGAAGAAGACCAGGACAATTGATCAAGACCATTGCTGCCCTTGAAGATCTTCAGCTAATTATCCTTCATACCAACATCACCACCATTGAACAAACAGTTCTTTATTCATTCAATGTCAAGGTAGCTAGTGATTCAAGGTTCACCGCTGAAGATATAGCCAGCTCGGTTCAGCAGATATTCAGCTTTATCCATGCAAACACTAGCATGTGA 1173 0.4382 MEKDHNYSAPPSMPPSFNTLDYSLDHHQLHLYPQNQQHQHLMKFQTSDVMQFADFGPKLALNQAKNCEESGIDPVYFLKFPVLNDDKMEEDQNMMMNNNTDGGDGEAENDAERFNLVSVEDKCRLVGEEGMMREDEETRVSDDNNSVQLRFLGHEDLHKNSSTVQENKNKRKRPRTVKTSEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRLLGEAQARQVGDPTLTAQQPPFFPPLPLPNDQMKLVEMETGLHEETAESKSCLADVEVKLLGFDAMIKILSRRRPGQLIKTIAALEDLQLIILHTNITTIEQTVLYSFNVKVASDSRFTAEDIASSVQQIFSFIHANTSM* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g1304 390 SMART finulus 191 242 IPR011598 GO:0046983
Apr7g1304 390 MobiDBLite consensus disorder prediction 157 187 - -
Apr7g1304 390 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 185 236 IPR011598 GO:0046983
Apr7g1304 390 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 185 251 IPR036638 GO:0046983
Apr7g1304 390 CDD ACT_UUR-ACR-like 316 380 - -
Apr7g1304 390 Gene3D - 176 251 IPR036638 GO:0046983
Apr7g1304 390 PANTHER TRANSCRIPTION FACTOR FAMA 36 390 IPR044283 GO:0003700|GO:0010052
Apr7g1304 390 PANTHER TRANSCRIPTION FACTOR FAMA 36 390 - -
Apr7g1304 390 CDD bHLH_AtFAMA_like 188 255 - -
Apr7g1304 390 Pfam Helix-loop-helix DNA-binding domain 186 237 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g1304 Apr-Chr7 20127606 20130557 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g1304 43 390 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G24140 65.746 7.89e-143 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr7g1304 HLH 8.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g1304 - - gmx:100813515 582.408