Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g1239 ATGCGCCCTTCTTTGAGCACAACGACCACGCAAAATCTCTATGAACCCTATGTCTTGTCTTGGAGACCAGAAGAGAACCCATTGGATCTCAACAATTTGCCTGATGAGTACTCTAGAGATGGTAAACAAGCCTTCCAAGACAATTCCTCTTCTGGGGGCAGGAAAAAGAAAAGCAGCTTGAAGGACGCAAAAGAGGAGTGTGGGAAGGTCTACGAGTGTAGATTTTGTTCCCTTAAGTTCTGCAAGTCACAGGCTCTTGGGGGACACATGAACCGCCACCGCCAAGAAAGGGAAACAGAGACGCTGAACCATGCTCGTCAGCTGGTCTACCGTAACGATCATAGCCTATCCACTCAAGCTTCCCCTCATCTAGGATGCTGTCAACCAATAGCATCAGGTGGGAGCTACCACCCTGCAAGCAACATGGGAGACCCAACGATGCGTCTCAGACTCCCAAGAAACATGTCTGCAAGTTCATCCTCAGTCCACATGCTCCCACCACGACCTCTTGCTTCACCACAACATCATCAACCATCTCAGCATTTTTTATACGCTTCACCTGCACACTACTCTCACACGCATCCAATGAAGGATTACTATGTGGGTCATGTTCTGAGTGGTGGCGTGACAAAGCAACACAACCTCAACGACTACACTTGCATTGGGGCACCTGTGGGACAACCATTTGGGGGTGGTGGTAAGGACATGTCACTACAGAATCAGGAGGATGGATTGAGTTGGGGAAGGAGCTCTTCAGCGATCAATCGGTTTCAAGATGGGTTCTAA 786 0.4911 MRPSLSTTTTQNLYEPYVLSWRPEENPLDLNNLPDEYSRDGKQAFQDNSSSGGRKKKSSLKDAKEECGKVYECRFCSLKFCKSQALGGHMNRHRQERETETLNHARQLVYRNDHSLSTQASPHLGCCQPIASGGSYHPASNMGDPTMRLRLPRNMSASSSSVHMLPPRPLASPQHHQPSQHFLYASPAHYSHTHPMKDYYVGHVLSGGVTKQHNLNDYTCIGAPVGQPFGGGGKDMSLQNQEDGLSWGRSSSAINRFQDGF* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g1239 261 ProSitePatterns Zinc finger C2H2 type domain signature. 73 93 IPR013087 -
Apr7g1239 261 MobiDBLite consensus disorder prediction 24 61 - -
Apr7g1239 261 PANTHER ZINC FINGER PROTEIN JAGGED 22 235 IPR045320 GO:0003700
Apr7g1239 261 ProSiteProfiles Zinc finger C2H2 type domain profile. 71 98 IPR013087 -
Apr7g1239 261 PANTHER ZINC FINGER PROTEIN JAGGED 22 235 IPR031113 GO:0007275
Apr7g1239 261 Gene3D Classic Zinc Finger 46 123 - -
Apr7g1239 261 SUPERFAMILY beta-beta-alpha zinc fingers 69 99 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g1239 Apr-Chr7 19456548 19459871 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g1239 24 173 C2H2 Transcription Factor Family AT1G13400 49.020 4.18e-29 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g1239 - - aprc:113871902 309.686
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g1239 7 19456548 19459871 Apr7g1239 7 19456548 19459871 ECH