Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g1211 ATGGAGGAAGAGGAAGATGAAGCAGTGTGGTATTCTTCTTCTGATTCCGGCGACGATGATATCGAACAACGGAAATCGCAGAATGTGGATGCCCTAGTGAGGGGTAACCTGATTGTGAAGAGGCAACCGTTGCTACCGCGACTTCTATCAGTATCGCAAGGGGCAGAGGTTTGTAGAAAGCCCTTCAAGCCTCCATGCTCCAAATCTGATGCTTCCAGTTACAATCAAGACCTCACTCGTAGGCTTTCCGTCCGCAAAAGGTTTGTTCCATGGGGCTCTTGCTCTTCTATTCCTAGACCCGCGTTCGAGGAGTTCAAATTCAATCTACCAGAAAGCCATGCTGATGTTGATGTTGATCTTGAAGTTGAACCATCTTTGCCCCCTGGGATTGATCCTCTAGTGTTGTGGCACCCTCAAGACTCCGAGGATGAACCTCCTAATTCTAATTTGACAGAGATAGCAGTTCACCCATTGCTCGTTCGTTACCTTCGTCCACATCAGAGAGAAGGGGTTCAGTTCATGTTTGATTGTGTCTCAGGGCTGTGTACCACCCCCAATATACATGGATGCATTTTGGCCGATGATATGGGCTTGGGGAAGACATTGCAGTCGATCACGTTATTGTATACTCTTCTTTGTCAAGGGTTTGATGGCAAGCCAATGGTTAGAAAGGCCATCATTGTGACTCCTACCAGCCTTGTCAGCAATTGGGAAGATGAAATCAAGAAGTGGGTTGGAGAAAGAGTTCATCTCGTTGCTCTATGTGAAAGCACAAGAGAAGATGTTATCTCTGGGATTGAAAGTTTTACAAGTCCCCAAAGCAATTTACAGGTGCTCATTGTTTCATATGAAACATTCCGAATGCATTCATCAAAGTTTAGCTCTGGTGACTCTTGTCACCTTCTCATATGTGACGAGGCTCACAGACTGAAAAATGATCAGACAATAACAAACCGGGCATTGGCAGCTCTCCCATGCAAACGTAGAATTTTGTTGTCAGGAACTCCTTTGCAAAATGACTTGGAAGAATTCTTTGCAATGGTTAACTTTACTAATCCTGGAATATTGGGTGATATTACACATTTTCGACGTTACTATGAGGCACCAATTATTTGTGGAAGAGAACCTGCTGCTACTGCAGAAGAGAAGAAGCTAGGTGCTGAACGCTCAGCAGAATTAAGTGTTAAAGTTAATCAGTTCATATTAAGAAGGACTAATGCATTGTTATCAAATCACTTGCCACCAAAGATGATTGAAGTTGTTTGCTGCAAGTTAACTCCACTACAGTCAGACCTTTACAAACATTTTATACAATCCAAAAATGTTAAACGAGTAATTACTGAAGAATTGAAGCAATCAAAGATTTTGGCCTACATAACAGCTCTGAAAAAGTTGTGCAATCATCCAAAGCTTATCTATGATACCATACGAAGTGGAAGTCCAGGAACTTCAGGTTTTGAGGACTGCATTCGATTCTTCCCTCCAGAAATGTTATCTGGAAGGTCTGGCTCATGGACAGGAGGGCATGGAGCTTGGGTTGAGTTATCTGGGAAAATGCATGTCTTAGCAAGATTACTTGCCCATTTGCGTCAGAGAACTAATGACCGCATTGTCCTTGTCTCAAACTACACTCAGACTCTTGATCTTTTTGCTCAATTGTGTCGGGAACGGAGGTACCCTCACTTGAGGCTTGATGGCTCTACATCAATCAGTAAAAGGCAGAAGTTGGTCAACTGCTTTAATGATCCATCCAAGGATGAATTTGTTTTTCTCTTAAGCAGCAAGGCTGGTGGTTGTGGACTCAATTTGATTGGTGGAAATCGACTTGTCTTGTTCGATCCTGATTGGAATCCAGCAAATGATAAACAAGCGGCAGCAAGAGTATGGCGGGATGGACAAAAGAAAAGAGTTTATATTTATAGATTTTTGAGTGCCGGAACAATAGAGGAAAAGGTCTACCAGCGTCAGATGTCAAAAGAAGGGTTGCAAAAGGTCATTCAGCAGGAGCAAACTGATAGCTTTGTGGCACAGGGAAACTTTCTTTCAGCAGAGGATCTTCGTGATTTGTTTACTTTTCATGAGAACATCAAGTCAGAGATTCATGAAAAGATGCGGTGCAGTCGGTGCCAAACATATGATGAGCCTCAAAGCACTGACGCCCAAACAATTATTGATAGTGAATCTGATGAAGATACCTCTGATATAGGTGGATTTGCAGGAATTGCCGGCTGCCTACAGAATTTAAAAAGATCAGAAAAACAGGTAGGAACCCCATTGGAAGAGGATTTGGGTAGTTGGGGCCATCATTTTTACCCAACTTCTGTACCAGATGCTATCCTTCAGGCTTCAGCCGGTGATGAGGTGACGTTTGTCTTTACAAACCAAGTTAACGGACACCTGGTACCCATTGAGTCCATCACCAGTCCCAAACTACAGCAAAAGGAACCAAATAAGGAATTAGTCAAGTCAAAGCAGAACGGTAAACAAAATTCCACTCCTTTTCCTTTACATAATAAACTGCCACTGCGGTCTGCTTCTGGTGTTGCTAATACGTCACCTTCCATTCCCAATGCTCGGACGAAGGAAAAACTAAATTCTGTCCGGATTAACAAAAACACCTCCATGAATCTAGCATTTCAGACCGATTACTCTCATGTAAATAAAGTAGTACCACAGAAACGATCATGTCCTGCAAATATCAATGATGATGATTTTGAGTAA 2721 0.4263 MEEEEDEAVWYSSSDSGDDDIEQRKSQNVDALVRGNLIVKRQPLLPRLLSVSQGAEVCRKPFKPPCSKSDASSYNQDLTRRLSVRKRFVPWGSCSSIPRPAFEEFKFNLPESHADVDVDLEVEPSLPPGIDPLVLWHPQDSEDEPPNSNLTEIAVHPLLVRYLRPHQREGVQFMFDCVSGLCTTPNIHGCILADDMGLGKTLQSITLLYTLLCQGFDGKPMVRKAIIVTPTSLVSNWEDEIKKWVGERVHLVALCESTREDVISGIESFTSPQSNLQVLIVSYETFRMHSSKFSSGDSCHLLICDEAHRLKNDQTITNRALAALPCKRRILLSGTPLQNDLEEFFAMVNFTNPGILGDITHFRRYYEAPIICGREPAATAEEKKLGAERSAELSVKVNQFILRRTNALLSNHLPPKMIEVVCCKLTPLQSDLYKHFIQSKNVKRVITEELKQSKILAYITALKKLCNHPKLIYDTIRSGSPGTSGFEDCIRFFPPEMLSGRSGSWTGGHGAWVELSGKMHVLARLLAHLRQRTNDRIVLVSNYTQTLDLFAQLCRERRYPHLRLDGSTSISKRQKLVNCFNDPSKDEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVYIYRFLSAGTIEEKVYQRQMSKEGLQKVIQQEQTDSFVAQGNFLSAEDLRDLFTFHENIKSEIHEKMRCSRCQTYDEPQSTDAQTIIDSESDEDTSDIGGFAGIAGCLQNLKRSEKQVGTPLEEDLGSWGHHFYPTSVPDAILQASAGDEVTFVFTNQVNGHLVPIESITSPKLQQKEPNKELVKSKQNGKQNSTPFPLHNKLPLRSASGVANTSPSIPNARTKEKLNSVRINKNTSMNLAFQTDYSHVNKVVPQKRSCPANINDDDFE* 907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g1211 906 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 149 404 IPR027417 -
Apr7g1211 906 CDD SF2_C_SNF 515 643 - -
Apr7g1211 906 Pfam SNF2-related domain 166 472 IPR000330 GO:0005524|GO:0140658
Apr7g1211 906 MobiDBLite consensus disorder prediction 844 865 - -
Apr7g1211 906 CDD DEXHc_RAD54 163 404 - -
Apr7g1211 906 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 521 682 IPR001650 -
Apr7g1211 906 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 408 795 IPR027417 -
Apr7g1211 906 MobiDBLite consensus disorder prediction 807 865 - -
Apr7g1211 906 SMART ultradead3 159 362 IPR014001 -
Apr7g1211 906 Gene3D - 404 714 IPR027417 -
Apr7g1211 906 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 181 354 IPR014001 -
Apr7g1211 906 Gene3D - 426 695 - -
Apr7g1211 906 Gene3D - 136 403 IPR038718 -
Apr7g1211 906 Pfam Helicase conserved C-terminal domain 523 631 IPR001650 -
Apr7g1211 906 PANTHER SNF2/RAD54 FAMILY MEMBER 29 828 - -
Apr7g1211 906 MobiDBLite consensus disorder prediction 823 837 - -
Apr7g1211 906 MobiDBLite consensus disorder prediction 1 26 - -
Apr7g1211 906 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-6-RELATED 29 828 - -
Apr7g1211 906 SMART helicmild6 548 632 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g1211 Apr-Chr7 19073422 19095382 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g1211 189 652 RAD5 or RAD16-like Gene Family AT3G16600 25.188 2.58e-24 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Apr7g1211 SNF2_N 1.9e-54 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g1211 K10875 - gmx:100781631 1553.88