Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g1172 ATGGGAGGTGACGCTGCCGCTGAGGGTGCCACGACGGAGCCCAACGCCGCTGGAGGAGTCAACATCAACATTCGCTGTTCCAATGGTTCCAAGTTTTCTGTTCAGATTAGCCTCGATTCGACCGTCAGATCCTTCAAGGATGTTGTAGCTCGCAACTGCGACATCCCCGCCGATCAACAGCGTCTGATTTACAAGGGTCGGATCCTAAAGGACGATCAAACTCTCCAAAGCTATGGTCTGGAGGCAGATCATACTGTCCATTTGGTTCGTGGCTTTGCACCTGCCAATACACCTGGTGGGACTAATAGTGGCTCAGCCAATACCACAACAACTAATACGGGAGGTGCTGGTGCTAATGAGAGTGGTGGGGGTTTAGGAGGGCCTGGATTTGGAGCTTCACTGTTCCCAGGATTGGGTATCAATGGAATGGGGGGCAATGGCCTCAACAGCTTATTTGGAGCCAGCTTCCCTGACCTTGAACAGATGCAGCAACCATTTTTGTCAAATCCAAATTTAGTGAGAGAAATAATGAACACGCCTGCTATGCAGAATTTGATAAATAATCCTGAGATAGTGCGGAATCTTATAATGAATAACCCACAGATGCAAGAGCTCATGGATAGAAACCCTGAGCTGGCACACATACTTAACGATCCGAGCACTCTTCGCCAGACACTTGAAGCTACTAGGAATCCTGAGATCATGCGTGAAATGATGAGGAATACAGACAGAGCAATGAGCAACATTGAATCTTCTCCTGAGGGATTCAACATGCTGAGGCGCATGTATGAAAATGTTCAAGAACCATTTTTAAATGCCACTACAATGGCTGGTAACACAGGCAATGATAGTGCAGCAATCAGGAACCAATCAACTAATCCCTCAACTACTAGTTCTGAAGCAACTTCCCCTGTACCCAATACTAACCCACTTCCAAATCCTTGGTCCTCTACTGGCACTGGAGGTGCACAAAATAACACCAGAAGGCCAGCTACTGGTGGCGATGCTCGACAGCAGGCTCCAACTGGCTTAGGGGGGCTTGGTCTGCCAGATCTTGAGGGCATGATGGGTGGTATGCCAGATGCTGCTTTATTGACCCAGTTAATGCAAAATCCAGCTATTTCACAAATGATGCAAAGTATGCTTTCCAATCCACAGACTATGAATCAGATTCTTGGTGCCAATGCTGAGCAACGTGGCATGCCTGATTTAAATTCTCTAAGGGAAGTGATGCAAAACCCTGAGTTCCTTCGCTTGTTTTCCTCCCCTGAGACACTGCAGCAACTATTGTCTTTCCAACAAGCCCTTCTGTCTCAGCTTGGTCAGCAACAGTCAACACAGGAACCGGGTCAAACTGGTGGAGGCACTGGACCGTTGAACAACTTGGGGCTGGAAATGTTATCAAGCATGTTTGGTGGTCTTGGAGCTGGTAGCCTGGCTGTTCCGAATAGATCAAATGAGCCACCGGAGCAGTTGTATGCCACCCAACTTTCTCAGCTTCAAGAGATGGGGTTCTTTGACACACAAGAAAACATAAGGGCTCTTATTGCTACATCAGGAAATGTTCATGCAGCAGTTGAGCGGCTTTTGGGGAACTCCGGGCAGTAG 1608 0.4801 MGGDAAAEGATTEPNAAGGVNINIRCSNGSKFSVQISLDSTVRSFKDVVARNCDIPADQQRLIYKGRILKDDQTLQSYGLEADHTVHLVRGFAPANTPGGTNSGSANTTTTNTGGAGANESGGGLGGPGFGASLFPGLGINGMGGNGLNSLFGASFPDLEQMQQPFLSNPNLVREIMNTPAMQNLINNPEIVRNLIMNNPQMQELMDRNPELAHILNDPSTLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTMAGNTGNDSAAIRNQSTNPSTTSSEATSPVPNTNPLPNPWSSTGTGGAQNNTRRPATGGDARQQAPTGLGGLGLPDLEGMMGGMPDAALLTQLMQNPAISQMMQSMLSNPQTMNQILGANAEQRGMPDLNSLREVMQNPEFLRLFSSPETLQQLLSFQQALLSQLGQQQSTQEPGQTGGGTGPLNNLGLEMLSSMFGGLGAGSLAVPNRSNEPPEQLYATQLSQLQEMGFFDTQENIRALIATSGNVHAAVERLLGNSGQ* 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g1172 535 SMART uba_6 493 531 IPR015940 -
Apr7g1172 535 MobiDBLite consensus disorder prediction 440 462 - -
Apr7g1172 535 Pfam Ubiquitin family 22 89 IPR000626 GO:0005515
Apr7g1172 535 SMART CBM 349 391 IPR006636 -
Apr7g1172 535 SMART CBM 199 238 IPR006636 -
Apr7g1172 535 SMART CBM 145 186 IPR006636 -
Apr7g1172 535 SMART CBM 394 429 IPR006636 -
Apr7g1172 535 SUPERFAMILY UBA-like 489 531 IPR009060 GO:0005515
Apr7g1172 535 SMART ubq_7 20 91 IPR000626 GO:0005515
Apr7g1172 535 MobiDBLite consensus disorder prediction 440 458 - -
Apr7g1172 535 CDD UBA_PLICs 493 531 - -
Apr7g1172 535 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 487 532 IPR015940 -
Apr7g1172 535 Gene3D - 194 252 - -
Apr7g1172 535 ProSiteProfiles Ubiquitin domain profile. 20 89 IPR000626 GO:0005515
Apr7g1172 535 Gene3D - 10 104 - -
Apr7g1172 535 MobiDBLite consensus disorder prediction 96 118 - -
Apr7g1172 535 PANTHER UBIQUILIN 6 535 - -
Apr7g1172 535 SUPERFAMILY Ubiquitin-like 16 105 IPR029071 -
Apr7g1172 535 CDD Ubl_Dsk2p_like 20 92 - -
Apr7g1172 535 Gene3D - 475 535 - -
Apr7g1172 535 MobiDBLite consensus disorder prediction 95 122 - -
Apr7g1172 535 MobiDBLite consensus disorder prediction 274 333 - -
Apr7g1172 535 MobiDBLite consensus disorder prediction 274 353 - -
Apr7g1172 535 Pfam UBA/TS-N domain 493 529 IPR015940 -
Apr7g1172 535 PANTHER UBIQUITIN DOMAIN-CONTAINING PROTEIN DSK2A-RELATED 6 535 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g1172 Apr-Chr7 18611063 18615992 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g1172 20 89 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 31.429 1.22e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g1172 K04523 - gmx:100797539 827.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g1172 7 18611063 18615992 Apr7g1172 7 18611063 18615992 ECH