Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g1142 ATGGCCGATTCTCCACCAAGAAGGAATTCAAGGTCCCCTTCTCCGTGGAGAGCTCAATCGAGGTCAAGATCCAGGTCAAGGTCTAGATCTAGGCCTAGGTCTAGATCACGGTCAAGATCTCTGGAAAAGCAAAGGCTAAGATCCCGTTCGAGGAGTCGTGGCAGGTCAGTGGCAATCATGGTTTACCTTTCAAGGGCGTGGTTATCAAGATCAAGAAGTAATGAAAGGCCTGAGGCGAAAAACACTGGGACTACACTTTATGTGACTGGCCTATCTTCAAGAGTCACGGAGAGAGAGCTAGAGCAGCATTTCTCTAAGGAGGGAAAAGTTGCTTCGTGTTTTCTTGTGGTGGAGCCTCGCACGCGGATTTCTCGTGGCTTTGCATTTATTACAATGGATTCTGTTGAGGATGCAAACCGCTGCATCAAATATCTCAATCAATCAGTTTTAGAGGGTCGCTATATCACTGTTGAGCGGTCACGAAGAAAGCGGCCAAGAACTCCTACACCTGGACATTACCTTGGGTTGAAAAGTACTAGAGACTATGGATATCGTGGTGACCGTGGAAGGTATCGAGGTGGTTCTGGTCGTGATGATTATTCATATCGTAGGTCTCCAAGGCGCTCACCATATCGAGGTGGTAGAGATTATTCACCGAAGCACTCACCCTATGGTGGAAGATCTAAGAGGGACAGGTCCAGGTCACTACCTTATTCTCCCTATGGCAGCCCAGATAGGAGGTATGCTCGTGGATCTAGGTGA 762 0.4816 MADSPPRRNSRSPSPWRAQSRSRSRSRSRSRPRSRSRSRSLEKQRLRSRSRSRGRSVAIMVYLSRAWLSRSRSNERPEAKNTGTTLYVTGLSSRVTERELEQHFSKEGKVASCFLVVEPRTRISRGFAFITMDSVEDANRCIKYLNQSVLEGRYITVERSRRKRPRTPTPGHYLGLKSTRDYGYRGDRGRYRGGSGRDDYSYRRSPRRSPYRGGRDYSPKHSPYGGRSKRDRSRSLPYSPYGSPDRRYARGSR* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g1142 253 MobiDBLite consensus disorder prediction 159 253 - -
Apr7g1142 253 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 2 249 - -
Apr7g1142 253 PANTHER RNA RECOGNITION MOTIF 2 249 - -
Apr7g1142 253 CDD RRM_RBMX_like 83 162 - -
Apr7g1142 253 SMART rrm1_1 85 158 IPR000504 GO:0003723
Apr7g1142 253 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 84 162 IPR000504 GO:0003723
Apr7g1142 253 MobiDBLite consensus disorder prediction 1 21 - -
Apr7g1142 253 MobiDBLite consensus disorder prediction 1 53 - -
Apr7g1142 253 Gene3D - 7 169 IPR012677 -
Apr7g1142 253 SUPERFAMILY RNA-binding domain, RBD 75 194 IPR035979 GO:0003676
Apr7g1142 253 MobiDBLite consensus disorder prediction 181 215 - -
Apr7g1142 253 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 86 155 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g1142 Apr-Chr7 18387991 18390568 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g1142 80 166 Eukaryotic Initiation Factors Gene Family AT1G49760 32.184 1.30e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g1142 K12897 - gmx:100527350 291.967