Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g1098 ATGGGTCTCTGTTTCTCCGCCACCAAAGTCAGCGGTTCTAACAGCAACAACGCCAACAACACCTCCAATCGCTACCGTAAATGTTCCAAGCCTCAAGCCGTGACGGTGAATAAGAACCAAGCCTCGCAGGGTCAACGCCGACGAGTGCCAGAGGAGAAGAATCAACGACCCAGAGAGAAAACCAACGCGCGCCGCCAAGGGGGGCATGTTCCCTGTGGAAAGCGAACAGATTTCGGTTACGAGAAGGATTTTGATAAGAAATTCTCGCTTGGGAAATTGTTGGGGCATGGCCAATTCGGTTATACCTATGTTGGAGTTGATAAAGTAAATGGGGATCGTGTTGCCGTTAAGAGACTCGAGAAGAGCAAGATGGTTCTCCCGATAGCCGTTGAGGATGTGAAGCGAGAGGTCAAGATATTGAAAGAACTTACGGGCCATGAAAATGTAGTTCAGTTCTATAATGCTTTTGAGGATGATTCATATGTTTACATAGTTATGGAGTTATGCGAGGGTGGAGAGCTGTTAGATCGGATATTAGCCAAGAAGGATAGTCGTTATACTGAAAAAGATGCAGCCGTGGTTGTGAGGCAGATGCTCAAAGTTGCGGCTCAGTGTCATTTACATGGGTTGGTGCATCGGGACATGAAACCAGAGAATTTTCTTTTCAAATCAACCAGAGAAGATTCACCTTTAAAGGCTACTGATTTTGGTTTATCTGATTTCATAAAACCTGGAAAGAGGTTTCAAGATATTGTTGGCAGTGCTTACTATGTTGCACCGGAAGTGTTAAAACGGAAGTCAGGCCCTGAATCAGACGTATGGAGTATTGGTGTGATTACATACATATTGCTTTGTGGGAGACGCCCGTTTTGGGATAAGACTGAGGATGGTATCTTCAAGGAGGTCTTACGGAATAAACCTGATTTCCGGCGGAAACCATGGCCAACTATAAGCAATGCAGCAAAAGATTTTGTGAAGAAATTGTTGGTAAAAGATCCTCGGGCAAGATATACTGCTGCTCAGGCTCTATCACATCCATGGGTTAGAGAAGGAGGAGAGGCATTGGAGATTCCTATTGATATATCTGTCCTGAACAACATGCGGCAGTTTGTGAAGTATAGTCGGTTGAAACAATTTGCACTGAGGGCATTGGCTAGCACACTTAATGAAGAAGAGTTGTCTAATCTAAAAGATCAGTTTGATGCAATAGATGTGGACAAAAATGGTTCTATTAGTCTTGAAGAGATGAGACAGGCTCTTGCTAAAGATCTCCCTTGGAAGTTGAAAGAATCACGTGTACTGGAGATATTGCAAGCGATAGACAGCAACACAGATGGGCTAGTGGATTTCACCGAGTTTGTGGCAGCTACATTACATGTACATCAATTGGAAGAACATGATTCTGAGAAGTGGCAGCAACGGTCACAGGCAGCTTTTGAGAAATTTGACTTGGATAAGGATGGCTATATTACTCCCGATGAACTTAGAATGCATACGGGTCTGAGAGGGTCCATTGATCCATTGCTTGAGGAAGCCGATATTGACAAAGACGGAAAAATCAGCTTACCAGAATTTCGGAGACTTCTAAGAACTGCAAGCATTTCGCGAACTGTATCGAGCCCAAGTATTCATCGGAAGAGTTAG 1644 0.441 MGLCFSATKVSGSNSNNANNTSNRYRKCSKPQAVTVNKNQASQGQRRRVPEEKNQRPREKTNARRQGGHVPCGKRTDFGYEKDFDKKFSLGKLLGHGQFGYTYVGVDKVNGDRVAVKRLEKSKMVLPIAVEDVKREVKILKELTGHENVVQFYNAFEDDSYVYIVMELCEGGELLDRILAKKDSRYTEKDAAVVVRQMLKVAAQCHLHGLVHRDMKPENFLFKSTREDSPLKATDFGLSDFIKPGKRFQDIVGSAYYVAPEVLKRKSGPESDVWSIGVITYILLCGRRPFWDKTEDGIFKEVLRNKPDFRRKPWPTISNAAKDFVKKLLVKDPRARYTAAQALSHPWVREGGEALEIPIDISVLNNMRQFVKYSRLKQFALRALASTLNEEELSNLKDQFDAIDVDKNGSISLEEMRQALAKDLPWKLKESRVLEILQAIDSNTDGLVDFTEFVAATLHVHQLEEHDSEKWQQRSQAAFEKFDLDKDGYITPDELRMHTGLRGSIDPLLEEADIDKDGKISLPEFRRLLRTASISRTVSSPSIHRKS* 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g1098 547 MobiDBLite consensus disorder prediction 1 72 - -
Apr7g1098 547 Gene3D - 389 458 - -
Apr7g1098 547 SMART efh_1 504 532 IPR002048 GO:0005509
Apr7g1098 547 SMART efh_1 395 423 IPR002048 GO:0005509
Apr7g1098 547 SMART efh_1 432 460 IPR002048 GO:0005509
Apr7g1098 547 SMART efh_1 474 502 IPR002048 GO:0005509
Apr7g1098 547 ProSiteProfiles EF-hand calcium-binding domain profile. 391 426 IPR002048 GO:0005509
Apr7g1098 547 ProSitePatterns EF-hand calcium-binding domain. 483 495 IPR018247 -
Apr7g1098 547 ProSiteProfiles EF-hand calcium-binding domain profile. 470 505 IPR002048 GO:0005509
Apr7g1098 547 ProSiteProfiles Protein kinase domain profile. 88 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr7g1098 547 Gene3D - 369 528 - -
Apr7g1098 547 CDD STKc_CAMK 87 347 - -
Apr7g1098 547 ProSitePatterns EF-hand calcium-binding domain. 513 525 IPR018247 -
Apr7g1098 547 MobiDBLite consensus disorder prediction 45 65 - -
Apr7g1098 547 Gene3D Phosphorylase Kinase; domain 1 81 173 - -
Apr7g1098 547 MobiDBLite consensus disorder prediction 7 44 - -
Apr7g1098 547 Pfam EF-hand domain pair 476 529 IPR002048 GO:0005509
Apr7g1098 547 Pfam EF-hand domain pair 395 457 IPR002048 GO:0005509
Apr7g1098 547 ProSiteProfiles EF-hand calcium-binding domain profile. 428 463 IPR002048 GO:0005509
Apr7g1098 547 ProSitePatterns Serine/Threonine protein kinases active-site signature. 210 222 IPR008271 GO:0004672|GO:0006468
Apr7g1098 547 Gene3D Transferase(Phosphotransferase) domain 1 174 368 - -
Apr7g1098 547 PANTHER SERINE/THREONINE-PROTEIN KINASE 40 538 - -
Apr7g1098 547 SUPERFAMILY EF-hand 380 533 IPR011992 -
Apr7g1098 547 SMART serkin_6 88 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr7g1098 547 SUPERFAMILY Protein kinase-like (PK-like) 86 361 IPR011009 -
Apr7g1098 547 ProSitePatterns Protein kinases ATP-binding region signature. 94 117 IPR017441 GO:0005524
Apr7g1098 547 ProSitePatterns EF-hand calcium-binding domain. 404 416 IPR018247 -
Apr7g1098 547 Pfam Protein kinase domain 90 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr7g1098 547 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 28-LIKE 40 538 - -
Apr7g1098 547 ProSitePatterns EF-hand calcium-binding domain. 441 453 IPR018247 -
Apr7g1098 547 ProSiteProfiles EF-hand calcium-binding domain profile. 508 535 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g1098 Apr-Chr7 17969170 17974498 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g1098 1 541 EF-hand Containing Proteins AT2G17890 77.224 0.0 872
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Apr7g1098 Pkinase 1.2e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g1098 K13412 - gmx:100817249 985.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g1098 7 17969170 17974498 Apr7g1098 7 17969170 17974498 ECH