Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g1085 ATGTCTACCGCCGGAGAAGGTGATACTCCCGCTTTTGAAAAGCCAGTGGAGGAGCTGAAAGCGCCGGAGGAGTCCAAGCCCTTGAAGGAGAAAAAACCTAGGGCTCCAAGAGAGAAGAAACCTAAGCCTGCCAAAACCGCTTCGCATCCTCCATATTTTCAGATGATTAAGGAGGCTTTGATGGCTCTGAACGAGAAGGGAGGTTCAAGCCCTTACGCGATAGCAAAGTACATGGAAGAGAAGCACAAGTCGGTACTCCCTGCTAATTTCAAGAAGATTCTAGGCTTGCAGCTGAAGAACCAAGCCGCGAGGGGAAAACTCGTGAAGATCAAGGCTTCGTACAAGCTTTCTGAACCCGCGAAGAAGGAGAAGAGGGAGAGCACGACTAGAGTGACGAGGGCGAGCGCAGAGAAGAAAGAGGCGCGTCCGAAACGAAGCCGAGCCGTAACAGCAGCTGCTACGAAAGGCAAGAAAAGCGAAGCGGCTAAGAAGGTGACGAAGGGAAGGAAGAAGGTGAAGAAGACGAAGAAGGTTTCAACGCCTGCGAAGCCCAAACAGCCCAAGTCCATTAAGTCTCCTTCAAAGAGGGCCCGTAAAGCTACTGTTGCTACGGCGTGA 618 0.5178 MSTAGEGDTPAFEKPVEELKAPEESKPLKEKKPRAPREKKPKPAKTASHPPYFQMIKEALMALNEKGGSSPYAIAKYMEEKHKSVLPANFKKILGLQLKNQAARGKLVKIKASYKLSEPAKKEKRESTTRVTRASAEKKEARPKRSRAVTAAATKGKKSEAAKKVTKGRKKVKKTKKVSTPAKPKQPKSIKSPSKRARKATVATA* 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g1085 205 MobiDBLite consensus disorder prediction 11 34 - -
Apr7g1085 205 PANTHER HISTONE H1 7 201 - -
Apr7g1085 205 MobiDBLite consensus disorder prediction 1 52 - -
Apr7g1085 205 PRINTS Histone H5 signature 35 56 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Apr7g1085 205 PRINTS Histone H5 signature 62 79 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Apr7g1085 205 PRINTS Histone H5 signature 132 146 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Apr7g1085 205 PRINTS Histone H5 signature 182 201 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Apr7g1085 205 Pfam linker histone H1 and H5 family 49 115 IPR005818 GO:0000786|GO:0003677|GO:0006334
Apr7g1085 205 CDD H15 46 125 IPR005818 GO:0000786|GO:0003677|GO:0006334
Apr7g1085 205 MobiDBLite consensus disorder prediction 115 146 - -
Apr7g1085 205 PANTHER HISTONE H1 7 201 - -
Apr7g1085 205 SMART h15plus2 46 113 IPR005818 GO:0000786|GO:0003677|GO:0006334
Apr7g1085 205 MobiDBLite consensus disorder prediction 113 205 - -
Apr7g1085 205 MobiDBLite consensus disorder prediction 162 181 - -
Apr7g1085 205 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 48 118 IPR005818 GO:0000786|GO:0003677|GO:0006334
Apr7g1085 205 Gene3D - 44 129 IPR036388 -
Apr7g1085 205 SUPERFAMILY "Winged helix" DNA-binding domain 45 126 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g1085 Apr-Chr7 17830484 17831809 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g1085 45 120 Single Myb Histone (SMH) Gene Family AT1G72740 38.158 6.07e-09 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g1085 K11275 - gmx:100500169 230.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g1085 7 17830484 17831809 Apr7g1085 7 17830484 17831809 ECH