Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g1077 ATGGAAGAACCGCGTCAACCGCAGCCGGAAACAGCGGCGAGCGTTGTTAGGGATTTGGAGGAGTCGCGACTGGTCGGAGTTCCCGTCGCGCTAGCTCGCGATGTTGACGTGGCGGAGACAGAGGGTGCTTGTTGCGTGCCTAATTTGGAAGTCACCGTCGTGGACGGTGTCGTTTTGAAGAGGAAGCGTGGTCGTCCGGCCAGAGGCGTTCCGAAAACGGCTCCTCCTGTGAAGCAGCAGAAGGATGAGGAGGATGTTTGTTTCATTTGCTTCGACGGTGGAAGCCTCGTTCTCTGCGATCGCCGGGGTTGTCCCAAAGCGTATCATCCCGCGTGTATTAAGCGAGACGAGGCCTTCTTCCGATCGAAGGCCAAGTGGAATTGCGGTTGGCATATATGTAGTGCTTGTCAGAAGGCAGCCCATTATATGTGCTATACTTGCACATACTCTTTGTGCAAGGGATGTACAAAAGATGCTGATTTTGTTTGTGTCAGAGAAAACAAAGGTTTGTGTGGGGTATGCATGAGAACTATAATGCTGATTGAGAACAGTGCCCAGGGAAATAAGGAAATGTGCGAAGTGGATTTTGATGACAAGAGCAGCTGGGAGTATCTATTCAAGGTTTATTGGATGTATTTGAAAGGGAAGCTGTCTTTAACTTTTGACGAGCTCCTTCAAGCTAAAAACCCATGGAAAAGTGTTGCTCCTATGGGTTGTAAGATTCAAACTCCCCATGAACTTTATCATCTTAAAGATGACAAAGGTTCTGGTTCTGAGAACTCCTGTATAGACATAGAATCAAATAATTCAAAAAACAACAAGTCCAAGAGACCGCAGAAGCTTCTTAGCAAGGGTGATTGCTTTGATAGGGTAACTTCTGGTGGTGACAGTGGGGTGTCTTTGCCTGAATGCACAAAATGGGCATCAAAAGAGCTTTTAGAGTTTGTTGCACATATGAAAAATGGTGATACATCTCTCCTGTCTCAATTTGATGTCCAGACTCTCTTGCTGGAGTATGTAAAGAAAAATAATCTTCGTGATCCTCAACAGAAATCCCAAATTGTTTGTGACTCTAGACTATTAAATTTGTTTGGAAAAGCACGTGTTGGCCACATTGAAATGCTAGAGCTTCTCGAATCCCACTTTCTGTTAAAAGACAATGGCCCTGTGGAAAATACTTTTGGAGCAGGAATTATTGATGCTGTTGCTAGTGAAGGGGAAGCCATTAACAATTACAATAAACAGTTAGCGTTAGTTAGTGACAAGAGATGTAAAACACGTAGAAAGGATGATGTGATAGTGCCACAAAATAATCCTGATGCATATGCTGCTATAGACACTCACAACATTAACTTGATCTACTTGCGGCAAGCTCTGATGGAGAATCTAACTGAAGATATTGAAAAGATTCATGAGAAAGTTGTTGGTTCATTTGTGCGGATAAGAGTCTCTAGTAGTGATCAAAAACAAGATATGCATAGACTTGTCCAAGTTGTAGGTACAAGCAAGGTTGCTGAACCCTACAAAGTTGGCACAAAAGCAACTGATATTAAGCTTGAAATTTTAAACTTAAATAGGAAGGAGGTCATATCAATTGATGAAATTTCAAATCAGGAGTTTGCTGAGGATGAATGCAAGCGTTTGCGTCAGAGTATAAAATATGGGCTGTCAAAAAGATTGACTGTGGGAGAGATTCTGGACAAAGCATTGGCACTTCAAGCAATTAGAGTTAATGATTTGCTGGAAGCTGAGATATTGCGGCTTAATCATCTTCGAGATAGAGCAAGTGAAAAGGGGCATAGAAAAGAGCTTAAAGAGTATGTGGAGAAGTTGCAGCTACTAAACTCTCCGGAGGAACGTCAGCGCAGGCTGCATGAAATTCCGGATGTACACTCTGACCCCAATTTGGATTCAATGTTTGAGTCTGATGAAGATGATGGAGAGTCTGATGAAAGGAAGAAAGATGGCAATATATGGTCAAAATATCTTGGATTTGATAGAAGAGAGAGGGGGCCTGTTTTTCCCAAAATTTGGAATGGTGTCTTGAACGATGTGGGATGCAAAACACAAGACTTACCTGCTGCCCGCCAGCCAATGGGGAATATATGCGTGCTAAAGAATCATATTAACCATGATGATACAGCTATCGATGATAGCACTAAGGCAGTTCCCAAATCAGAAGTGTCTACTGTTCCAGTGGATATTTCATCATCTCTTCTCTCTACTGGATTGGAACAGCCATTTAATGATCTTAGGAGTGATAGGTCATGGCATTATCAGGATCCAACTGGGAAGATTCAAGGACCTTTTTCTATGTTGCAGCTGTGGAATTGGAATAAAAGTGGTCACTTCCCTCCTGATCTCAGAATATGGAAGATAGATGATAAACAAGATAACTCTATATTGTTGACTGATGCAATAAGTGGGAAGTGTTCCAAAACTGTGTCATTGCCATTCAACAGCCAGTTGCTGTCTTTAGGTGTCAGTGTTACCTTGGATAATAAAGATAATAGTCAGGATGCTGGGAGGAATGCATCAAAGAATGAAATTTCTTCAGACAGCCAAATTATCGAGCAGAGCAGGGAACAAAAGGTGGATGATACCTCTACTCAGTCTAATGGTAAAGATGAATCTGTTAGGAGCAATGGATGGCAGGACCAACTGCATGTTTTTCCTCCATTACTCTCAACTGCCTTTCCTGAGAACTTGAATGAGATTCCTTCTGATAAATTAAGGAAAGGTCATGGGATAGAAGGAAACTCTGAAGATAATGGAAATAATGGCTCTAACAGGACATCTGATGGTCAGAGTAATAGTGGGCAGAGTTATCATAAGCAATCAGATAGTGAAGATAATTCAGGGCAATCTTCTGGACAGAACTGGAGACACACCAATGTAAATAGTTCTTCCAATTGCTTGGTTACCACATCAACTCATGTTTCGGGTACAAAGACATCACCGCACAAGCTGGGATTTGATTTGCATAATCCCCCTTCCCCTCCAGCATGTAATACAACTACATGGCAGGCAATCATTGGTGAACCCAATGATTTTGATGAGTCAGTTTCAGATCTATTGGCAGAAGTGGAGGCAATGGAATCACTGGGTGGCTTGGAATCTCCCACTTCAATCATGAAATGTGGTGAGGAATTGACTGAAGGTTCTAAAAATGATTGTCTCAATTTTGCAGAGCTTAGTCCAATGCTTGACGCAGGTAAAGGTGATGCACTGAGTTCCACAGCTGATTTAAACTTACCATCTCAATCATCAGCAGCCGAGGAACCTTTACAGCAAGCAGATGTACATCATCATCAAAGAATATCTGGGGAGCATTCTTCAAGAAGTTCTAAAGTTGAGGTGGGTACAAAGAATGTTAGTGTTTCAGGTAATCAGTGGGAGTCACGTTCAGAAAATTCACCCATTGTTCCATCCTCTGCAACCTTGGGCTTGGCTACAGACACAACTTGGAGACTTGGGTCAGAGAATACACACTTGGGATGGGGTGGAATTGATCAAGGAAATGCAAACATGGGTTGGGGAGTATGCCAAACGGCAGTGCAGGAAAACAGGAGCTCAAATTCATACAATTCTGTAGTAACTCAAGCCTTTGGAGACAGCCAAACAAGATATGGCAGTGATCGATTTTCTGTACCCAGAGATCGGGGTTTGCAAGGTCATGGTAGGGAATCAGGTTTTGGAAGGGGCAGAATTGCATATAACAGGCAATCATTATTTGGTGTTGGAAATGGAGGCTCATATAGGCCTCTGCCCAAAGGGCAGCGAGTTTGTAAATTTTATGAAAGTGGGTACTGTAAGAAGGGAGCATCCTGTGATTACTTGCACCCATGA 3849 0.4263 MEEPRQPQPETAASVVRDLEESRLVGVPVALARDVDVAETEGACCVPNLEVTVVDGVVLKRKRGRPARGVPKTAPPVKQQKDEEDVCFICFDGGSLVLCDRRGCPKAYHPACIKRDEAFFRSKAKWNCGWHICSACQKAAHYMCYTCTYSLCKGCTKDADFVCVRENKGLCGVCMRTIMLIENSAQGNKEMCEVDFDDKSSWEYLFKVYWMYLKGKLSLTFDELLQAKNPWKSVAPMGCKIQTPHELYHLKDDKGSGSENSCIDIESNNSKNNKSKRPQKLLSKGDCFDRVTSGGDSGVSLPECTKWASKELLEFVAHMKNGDTSLLSQFDVQTLLLEYVKKNNLRDPQQKSQIVCDSRLLNLFGKARVGHIEMLELLESHFLLKDNGPVENTFGAGIIDAVASEGEAINNYNKQLALVSDKRCKTRRKDDVIVPQNNPDAYAAIDTHNINLIYLRQALMENLTEDIEKIHEKVVGSFVRIRVSSSDQKQDMHRLVQVVGTSKVAEPYKVGTKATDIKLEILNLNRKEVISIDEISNQEFAEDECKRLRQSIKYGLSKRLTVGEILDKALALQAIRVNDLLEAEILRLNHLRDRASEKGHRKELKEYVEKLQLLNSPEERQRRLHEIPDVHSDPNLDSMFESDEDDGESDERKKDGNIWSKYLGFDRRERGPVFPKIWNGVLNDVGCKTQDLPAARQPMGNICVLKNHINHDDTAIDDSTKAVPKSEVSTVPVDISSSLLSTGLEQPFNDLRSDRSWHYQDPTGKIQGPFSMLQLWNWNKSGHFPPDLRIWKIDDKQDNSILLTDAISGKCSKTVSLPFNSQLLSLGVSVTLDNKDNSQDAGRNASKNEISSDSQIIEQSREQKVDDTSTQSNGKDESVRSNGWQDQLHVFPPLLSTAFPENLNEIPSDKLRKGHGIEGNSEDNGNNGSNRTSDGQSNSGQSYHKQSDSEDNSGQSSGQNWRHTNVNSSSNCLVTTSTHVSGTKTSPHKLGFDLHNPPSPPACNTTTWQAIIGEPNDFDESVSDLLAEVEAMESLGGLESPTSIMKCGEELTEGSKNDCLNFAELSPMLDAGKGDALSSTADLNLPSQSSAAEEPLQQADVHHHQRISGEHSSRSSKVEVGTKNVSVSGNQWESRSENSPIVPSSATLGLATDTTWRLGSENTHLGWGGIDQGNANMGWGVCQTAVQENRSSNSYNSVVTQAFGDSQTRYGSDRFSVPRDRGLQGHGRESGFGRGRIAYNRQSLFGVGNGGSYRPLPKGQRVCKFYESGYCKKGASCDYLHP* 1283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g1077 1282 Pfam GYF domain 757 799 IPR003169 GO:0005515
Apr7g1077 1282 MobiDBLite consensus disorder prediction 920 970 - -
Apr7g1077 1282 Gene3D - 445 574 IPR036128 GO:0003677
Apr7g1077 1282 MobiDBLite consensus disorder prediction 1118 1146 - -
Apr7g1077 1282 ProSitePatterns Zinc finger PHD-type signature. 87 147 IPR019786 -
Apr7g1077 1282 SUPERFAMILY FYVE/PHD zinc finger 79 131 IPR011011 -
Apr7g1077 1282 CDD PHD5_NSD 86 131 - -
Apr7g1077 1282 CDD GYF 754 809 IPR003169 GO:0005515
Apr7g1077 1282 MobiDBLite consensus disorder prediction 1080 1095 - -
Apr7g1077 1282 MobiDBLite consensus disorder prediction 859 873 - -
Apr7g1077 1282 Gene3D SWIB/MDM2 domain 300 389 IPR036885 -
Apr7g1077 1282 ProSiteProfiles SWIB/MDM2 domain profile. 301 384 IPR003121 -
Apr7g1077 1282 SUPERFAMILY SWIB/MDM2 domain 306 383 IPR036885 -
Apr7g1077 1282 Coils Coil 578 598 - -
Apr7g1077 1282 ProSiteProfiles Zinc finger C3H1-type profile. 1257 1282 IPR000571 GO:0046872
Apr7g1077 1282 ProSiteProfiles Plus3 domain profile. 444 577 IPR004343 GO:0003677
Apr7g1077 1282 SMART gyf_5 755 810 IPR003169 GO:0005515
Apr7g1077 1282 MobiDBLite consensus disorder prediction 260 276 - -
Apr7g1077 1282 MobiDBLite consensus disorder prediction 1073 1146 - -
Apr7g1077 1282 MobiDBLite consensus disorder prediction 619 653 - -
Apr7g1077 1282 CDD SWIB-MDM2_like 307 382 - -
Apr7g1077 1282 MobiDBLite consensus disorder prediction 619 638 - -
Apr7g1077 1282 MobiDBLite consensus disorder prediction 833 884 - -
Apr7g1077 1282 SMART swib_2 304 387 IPR019835 -
Apr7g1077 1282 SMART rtf1 444 554 IPR004343 GO:0003677
Apr7g1077 1282 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44 11 988 - -
Apr7g1077 1282 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44 995 1282 - -
Apr7g1077 1282 MobiDBLite consensus disorder prediction 1097 1117 - -
Apr7g1077 1282 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 995 1282 - -
Apr7g1077 1282 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 11 988 - -
Apr7g1077 1282 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 175 IPR013083 -
Apr7g1077 1282 SUPERFAMILY Plus3-like 445 573 IPR036128 GO:0003677
Apr7g1077 1282 MobiDBLite consensus disorder prediction 259 280 - -
Apr7g1077 1282 Pfam SWIB/MDM2 domain 309 382 IPR003121 -
Apr7g1077 1282 MobiDBLite consensus disorder prediction 833 858 - -
Apr7g1077 1282 ProSiteProfiles GYF domain profile. 754 808 IPR003169 GO:0005515
Apr7g1077 1282 SUPERFAMILY CCCH zinc finger 1257 1281 IPR036855 GO:0046872
Apr7g1077 1282 SUPERFAMILY GYF domain 753 808 IPR035445 -
Apr7g1077 1282 SMART PHD_3 86 132 IPR001965 -
Apr7g1077 1282 MobiDBLite consensus disorder prediction 1209 1231 - -
Apr7g1077 1282 MobiDBLite consensus disorder prediction 905 970 - -
Apr7g1077 1282 ProSiteProfiles Zinc finger PHD-type profile. 84 150 IPR019787 -
Apr7g1077 1282 Gene3D - 756 812 IPR035445 -
Apr7g1077 1282 Pfam Plus-3 domain 449 552 IPR004343 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g1077 Apr-Chr7 17735742 17742524 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g1077 84 172 PHD Transcription Factor Family AT5G36670 31.868 1.71e-06 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI or SNF-BAF60b Apr7g1077 Plus-3 4.5e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g1077 - - aprc:113869503 2580.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g1077 7 17735742 17742524 Apr7g1077 7 17735742 17742524 ECH