Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Apr7g1076 | ATGGAATCGCAGCTTCAGCAGCAGCCCCCAGCGGTCACGCCAGCCGCGGAGGTTGTCAGCGCCGCTGTTGGGGATTTCGAGAAGTCGCAGCTCGTTGGAGTTTCTGTCACAGAGGCCTCCGATGTTGAGATGGCTGAGGTAAACGATGGTGGTATGGTCGCCGTTTTGAAAAGGAAGCGTGGTCGTCCAGCCAAGGGAAAGACCGTTCCGAAAACGACTCCTCCGTTGAAGCCGAAGAAGGATGAGGAAGATGTTTGCTTCATATGCTTCGATGGTGGAAGCCTTGTTCTCTGCGATCGCCGGGGTTGCCCTAAAGCCTATCATCCCTCGTGTATTAAGCGAGACGAAGCATTTTTCCGTTCAAAGGCCAAGTGGAATTGCGGTTGGCATATATGTAGCAATTGTGGAAAGACATCGCATTATATGTGCTACACTTGTACATATTCTTTGTGCAAGGGATGTACAAAAGATGCTGATTTTGTCTGCGTAAGAGGAAATAAAGGTTTGTGTGGAATGTGCAAGAGGACTATAATGCTGATAGAGAACATTGCCCAGGGCAATAAGCCAATGTGTGAAGTCGATTTTGATGACAAGAGCAGCTGGGAATATCTCTTCAAGGTGTATTGGATGTATTTGAAAGAGAAGCTATCTTTGACACTTGATGAAATCCTTCAAGCTAAAAATCCATACAAAGGGATGGAGCTTCCAATTAGCGATATGGTGAATGATAAACCATGGCATTATCAGGATCCAACTGGGAAGATTCAAGGACCTTTCTCTATACTGCAGCTGCATCAGTGGAATGCAAGCGGATACTTTCCTACAAATCTAAGAATATGGAAGATAGATGAGAAACAAGATAACTCTATGTTCTTAACAGATGTTCTGAGTGGGAAGTATTCCAAACATGTGTCGGCATCATACAACAGCCAACAACTGTTTTTGGGGGCCAATGGTAAAATGGATAATAAAGAAAATAGTCAGGATGGTGAGAGCAATATGACAAGGATTGAAAATTTTGCACAGAGTCAAATTATTGAGCAGAGTGTGGAGCAAAAGGTAGATGATACTCATGCACAATCAAATGGTATAGATGAATCTGTTAGGAGCAATGGATGGCACTCTCAGTCTCCTTGTTGGACTGTACAAGCAGATGGGAATAACAATGAGGGGCAAAGTGGAAATTTTGAAAGGAGGGAAGAGTCATCAAAATGTGAAATTTCTTGTCATGACCACCCCCATGTAAACCCTTCTCTACCATCAACTACCTTTTTTGAGAAACTGATCGAGAATCCTTCTGATAAATTAAGGGAAGATCATGGGATCGAGAGAAAATCTGAAGATAATGGAAATTTCGATTTGAACAGGATTTCTGATGGTCAAAGTAATAGTGGGCAAAGTTGTCAGAAACAATCAGACAGTGAGGATAATTCTGGGCAGTCTTCCGGTCAAAACTGGAGATGCCCTAGTCCTAATGTAACTAATCCAGTGTGTAATACATCTACATGGCTGGCAATCTTTGGCGAACCAACTGATTTTGATGAGTCAGTTTCAGATCTGTTGGCAGAAGTGGAGGCAATGGGGATGGAGTCATTTGGTGGCTTGGAATCTCCCACTTCAATCATGAAATGTGGTGAGGAGTTGACTGATGGTTCTATAACTGATTGTCTTAGTTTTGCAGATGGGCTTAGCCCAATGCTTGATGCAGGTAAAGGTGATGCACTGAGCTCCACAGGTGATTTACACTTACAATCTCAATCCACAACAGCAGAGCAACCGTTTCAGCAAGCAGATGTGCATCATCATCATCAAAGAATATCTGGGGAGCATTCATCAAAGAGCTCTGAAGTTGAGTCTACTTTCTCCAGGATTAGTTGGAATCCAACCATTCAATTTTCCTGGGATCCCAATTGTTGA | 1917 | 0.433 | MESQLQQQPPAVTPAAEVVSAAVGDFEKSQLVGVSVTEASDVEMAEVNDGGMVAVLKRKRGRPAKGKTVPKTTPPLKPKKDEEDVCFICFDGGSLVLCDRRGCPKAYHPSCIKRDEAFFRSKAKWNCGWHICSNCGKTSHYMCYTCTYSLCKGCTKDADFVCVRGNKGLCGMCKRTIMLIENIAQGNKPMCEVDFDDKSSWEYLFKVYWMYLKEKLSLTLDEILQAKNPYKGMELPISDMVNDKPWHYQDPTGKIQGPFSILQLHQWNASGYFPTNLRIWKIDEKQDNSMFLTDVLSGKYSKHVSASYNSQQLFLGANGKMDNKENSQDGESNMTRIENFAQSQIIEQSVEQKVDDTHAQSNGIDESVRSNGWHSQSPCWTVQADGNNNEGQSGNFERREESSKCEISCHDHPHVNPSLPSTTFFEKLIENPSDKLREDHGIERKSEDNGNFDLNRISDGQSNSGQSCQKQSDSEDNSGQSSGQNWRCPSPNVTNPVCNTSTWLAIFGEPTDFDESVSDLLAEVEAMGMESFGGLESPTSIMKCGEELTDGSITDCLSFADGLSPMLDAGKGDALSSTGDLHLQSQSTTAEQPFQQADVHHHHQRISGEHSSKSSEVESTFSRISWNPTIQFSWDPNC* | 639 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Apr7g1076 | 638 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 79 | 178 | IPR013083 | - | |
| Apr7g1076 | 638 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED | 494 | 620 | - | - | |
| Apr7g1076 | 638 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED | 237 | 490 | - | - | |
| Apr7g1076 | 638 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED | 21 | 234 | - | - | |
| Apr7g1076 | 638 | SMART | gyf_5 | 244 | 299 | IPR003169 | GO:0005515 | |
| Apr7g1076 | 638 | MobiDBLite | consensus disorder prediction | 596 | 612 | - | - | |
| Apr7g1076 | 638 | SMART | PHD_3 | 85 | 131 | IPR001965 | - | |
| Apr7g1076 | 638 | ProSitePatterns | Zinc finger PHD-type signature. | 86 | 146 | IPR019786 | - | |
| Apr7g1076 | 638 | ProSiteProfiles | Zinc finger PHD-type profile. | 83 | 149 | IPR019787 | - | |
| Apr7g1076 | 638 | MobiDBLite | consensus disorder prediction | 453 | 491 | - | - | |
| Apr7g1076 | 638 | MobiDBLite | consensus disorder prediction | 578 | 595 | - | - | |
| Apr7g1076 | 638 | ProSiteProfiles | GYF domain profile. | 243 | 297 | IPR003169 | GO:0005515 | |
| Apr7g1076 | 638 | MobiDBLite | consensus disorder prediction | 575 | 617 | - | - | |
| Apr7g1076 | 638 | SUPERFAMILY | GYF domain | 239 | 297 | IPR035445 | - | |
| Apr7g1076 | 638 | MobiDBLite | consensus disorder prediction | 355 | 420 | - | - | |
| Apr7g1076 | 638 | CDD | PHD5_NSD | 85 | 130 | - | - | |
| Apr7g1076 | 638 | Pfam | GYF domain | 246 | 286 | IPR003169 | GO:0005515 | |
| Apr7g1076 | 638 | SUPERFAMILY | FYVE/PHD zinc finger | 77 | 130 | IPR011011 | - | |
| Apr7g1076 | 638 | MobiDBLite | consensus disorder prediction | 394 | 411 | - | - | |
| Apr7g1076 | 638 | MobiDBLite | consensus disorder prediction | 434 | 452 | - | - | |
| Apr7g1076 | 638 | MobiDBLite | consensus disorder prediction | 363 | 393 | - | - | |
| Apr7g1076 | 638 | MobiDBLite | consensus disorder prediction | 434 | 491 | - | - | |
| Apr7g1076 | 638 | Gene3D | - | 245 | 302 | IPR035445 | - | |
| Apr7g1076 | 638 | CDD | GYF | 246 | 298 | IPR003169 | GO:0005515 | |
| Apr7g1076 | 638 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44 | 494 | 620 | - | - | |
| Apr7g1076 | 638 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44 | 21 | 234 | - | - | |
| Apr7g1076 | 638 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44 | 237 | 490 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Apr7g1076 | Apr-Chr7 | 17722076 | 17727315 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Apr7g1076 | 85 | 175 | PHD Transcription Factor Family | AT1G05380 | 34.066 | 7.11e-06 | 47.4 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Apr7g1076 | - | - | gmx:100800608 | 964.14 |