Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g1071 ATGGGTCGTGGGAAAATTGAGATAAAGTTGATTGAGAACCCCACCAACAGGCAAGTCACCTACTCCAAGAGAAGGAATGGTATCTTCAAGAAAGCTCATGAACTCAGTGTTCTTTGTGATGCTAAGGTTTCCCTCATCATGTTCTCTAAAAACAACAAGTTGCATGAATATATCAGCCCTGGCCTTACGACAAAGAAGATCATTGATCAGTATCAGAAGACTCTGGGGGATATTGATCTGTGGCGTTCCCACTATGAGAAAATGCTTGAAAACTTAAAGAAACTGAAAGATATTAACATCAAGCTCAGGAGACAGATCAGGCATAGGATAGGTGAGGGTTTGGACTCGGACGATCTGAGCTTCCAGCAACTGCGCAATCTTGAAGAGGATATGGTTGCTTCCATAGGGAAAATACGCGAAAGAAAGATTCATGTGATCAAAACTCGGACTGATACCTGTAAGAAAAAGGTTAGAAGCTTGGAGCAGATGAATGGAAATCTCCTGCTTGAACTTGAAAAGTGTGTGATCCATCCACAATTTCTTTTGCACGATGAAGGAGACGAGGAATCAGCAGTTGCATTGGCCAACGGTGCCTCCAACTTGTATGCATTCTGTCAGCACCATACTCATCTGAGTCTTCCTCACCATGGAGAACCCTTTAAAATTGACGATCTGCGCCTTGCTTGA 687 0.4309 MGRGKIEIKLIENPTNRQVTYSKRRNGIFKKAHELSVLCDAKVSLIMFSKNNKLHEYISPGLTTKKIIDQYQKTLGDIDLWRSHYEKMLENLKKLKDINIKLRRQIRHRIGEGLDSDDLSFQQLRNLEEDMVASIGKIRERKIHVIKTRTDTCKKKVRSLEQMNGNLLLELEKCVIHPQFLLHDEGDEESAVALANGASNLYAFCQHHTHLSLPHHGEPFKIDDLRLA* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g1071 228 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Apr7g1071 228 Coils Coil 85 105 - -
Apr7g1071 228 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Apr7g1071 228 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Apr7g1071 228 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Apr7g1071 228 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 228 - -
Apr7g1071 228 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Apr7g1071 228 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Apr7g1071 228 Pfam K-box region 83 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Apr7g1071 228 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Apr7g1071 228 PANTHER FLORAL HOMEOTIC PROTEIN DEFICIENS ISOFORM X1 1 228 - -
Apr7g1071 228 Gene3D - 13 79 IPR036879 GO:0003677|GO:0046983
Apr7g1071 228 ProSiteProfiles K-box domain profile. 85 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Apr7g1071 228 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Apr7g1071 228 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g1071 Apr-Chr7 17651803 17653534 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g1071 1 217 MADS-box Gene Family AT3G54340 51.364 2.42e-67 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Apr7g1071 K-box 1.1e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g1071 K09264 - gmx:100784496 390.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g1071 7 17651803 17653534 Apr7g1071 7 17651803 17653534 ECH