Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g1029 ATGAGAACAGGTATTGGTGAAGAAAGGGAGACGTTACCAAATCCCCGCTCCTTTCAGGTACATAGTAAAATGTGCATAGAACTCATGAAATTAATGGATAGAATCTCAAAGATATTTCCAGAAATAGAGGCAGCACGGCCACGATGCTCATCAGGAATCGAGTCCCTGTGTTTGCTGAATAATGCAATTGGTAAAGCCAAACTACTTCTGCAACATTGCTCCGAATGCAGTAAACTCTACCTGGCTGTGACAGCGGAATCTATACTCTCTAGATGCCAAAAGGTAACAAGATCATTAGAGAAAAGCTTAATTCAGATGCAGGATATGGTTCCAGTTATGTTGGCTGTAGAGGTTTCTAGAATAATTGATGATCTGGAGTGTGCAACATTTGTTTTGGACCCTGATGAAGAAGAGGCTGGGAGGGTTGTGACAGAGGTGCTTACTTCAACCTCAGATTCAGTCAATGATTCTGAAGTTCAAGCCCTTCAATTTGCGGCATCACGACTGAATATAACAACCCAAAAGGCCATCGTAACAGAGCAACGATCTATTAAGAAGTTACTAGATAAAATTGGACCAAATGACCTGAAAAAAAAAAAGATACTGAGATATCTTCTGCATCTACTGAAAAAGCATGGAAAGCTCATGGTGGGAGAACGGGTGGAGAATGACTATTCTCGCTCTGAAGAAAAAGTTGCAACTGAGAACTCTAGTCACGATTCTCTAAGAAGCCATAATGCTGAGTCAGACCTATGCTTGAACTATGGTCAGAATGGAATTCACACCAATGAGTTGGGTGGAGTTACACTTGCACCCCTTGAGGAATATAAGTGCCCAATATCATCAAGGTTGATGTATGATCCTGTTATCATTGCTTCGGGAGTAACATATGAAAGGATGTGGATTAAAAAGTGGTTTCAAGAGGGTAATGTTATATGCCCAAAAACCAGAAAGAAACTACCCCATATGGCACTAACTCCAAACATTGCAATGAAGGATTTAATATCAAAGTGGTGCAGCAATAATGGGGTCTCCATACCTGACCCAAGTAGACAAGCACAAGATTTACGTTCATGGGAAACTTCTAACACTTCCATTAAGAGTTTAGGAAGTTACTTCAATGATTTTAATGTGCCAGTGGATCTAAGTAACATGTCACTTGGATCACTGGATGCTAGTTATGATTCAGATGCCTCACATGGTAGGACCAATCGTGGCTCAAATTTGGAGTTGATGAAGAGCAGTGACAAGTCTCACAAAAATCGAGCTCATACAGAGATACATGATACAGATTTGATGCTCTTGCCTAAACTCCATGATCTTCAATGGGATTCTCAATGCAAGGTCATTGAAGATCTTAAAGATCATTTGAAAAGCAATTGCCAAGCTGTTGTTTCTGTGTCTCCTGAAAATTTCATTGAACCACTGGTCAAATTTCTGAGCAATGCATATCATGTGCATGATGTTAAAGCGCTAATAGCTGGAACTCAGCTTCTGTTGGAATTTGTGAACAACTGCAGAAATGGCAAGACTAATTTGAATGAAGATACGTTCATTATGTTAGCAAGTTTTCTTGATTCAGATGTGATAGGAGAAACTCTAACCATAATGGAAGAACTCTCTGGATATGGGTTTAGTAAAGCTAAAATTGCAGCATCCAGTGCTCTCATTTCTGTTTTAAATATACTTGATTCCGATAACAAAGGTTTCCAACAACAAGCTATTAGAATAATGTTCAATTTGTCCTTCAGTGTTGAAGTTTGTCCCCGCTTGATATCTCTCAAGTGCATCCAAAAATTGTTGCCATTTTTTCAAGATAGGACCCTTTTGAGATACTGTATATATATATTGAAAAATCTTTGTGAAACTGAAGAGGGTAGGAATTCTGTTACTGAAACAAAGGGATGCATATCTACTGTTGCTGAAATACTTGAAACAGGCAATAATGAGGAACAAGAACATGCACTAGATGTTCTAGTCTCTTTATGCTCTCAACGTGTGGATCATTGTAAGTTGGTAATGGATGAGGTTATCATCACTCCTCTTTTCTATATCTCCCAGAATGGTAATGATAAAGCAAAGGAAAGTGCATTGGAACTGCTCAATCTTTTGAGAGATGCTAAGTATGTTGAGAATCAAGGTTCCCCTGAACCAAGTATCAACAACACTTCTCAAGATTCTAATAGTCACCATGAAGAAAATAAATCATCAAAGATGTCATCATTTCTGAAGAAATTATCACCTTTCTCAAAGTCCACTACCAAAAGATGA 2271 0.3862 MRTGIGEERETLPNPRSFQVHSKMCIELMKLMDRISKIFPEIEAARPRCSSGIESLCLLNNAIGKAKLLLQHCSECSKLYLAVTAESILSRCQKVTRSLEKSLIQMQDMVPVMLAVEVSRIIDDLECATFVLDPDEEEAGRVVTEVLTSTSDSVNDSEVQALQFAASRLNITTQKAIVTEQRSIKKLLDKIGPNDLKKKKILRYLLHLLKKHGKLMVGERVENDYSRSEEKVATENSSHDSLRSHNAESDLCLNYGQNGIHTNELGGVTLAPLEEYKCPISSRLMYDPVIIASGVTYERMWIKKWFQEGNVICPKTRKKLPHMALTPNIAMKDLISKWCSNNGVSIPDPSRQAQDLRSWETSNTSIKSLGSYFNDFNVPVDLSNMSLGSLDASYDSDASHGRTNRGSNLELMKSSDKSHKNRAHTEIHDTDLMLLPKLHDLQWDSQCKVIEDLKDHLKSNCQAVVSVSPENFIEPLVKFLSNAYHVHDVKALIAGTQLLLEFVNNCRNGKTNLNEDTFIMLASFLDSDVIGETLTIMEELSGYGFSKAKIAASSALISVLNILDSDNKGFQQQAIRIMFNLSFSVEVCPRLISLKCIQKLLPFFQDRTLLRYCIYILKNLCETEEGRNSVTETKGCISTVAEILETGNNEEQEHALDVLVSLCSQRVDHCKLVMDEVIITPLFYISQNGNDKAKESALELLNLLRDAKYVENQGSPEPSINNTSQDSNSHHEENKSSKMSSFLKKLSPFSKSTTKR* 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g1029 756 MobiDBLite consensus disorder prediction 740 756 - -
Apr7g1029 756 ProSiteProfiles U-box domain profile. 271 345 IPR003613 GO:0004842|GO:0016567
Apr7g1029 756 Gene3D - 432 717 IPR011989 -
Apr7g1029 756 SMART Ubox_2 275 338 IPR003613 GO:0004842|GO:0016567
Apr7g1029 756 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 271 345 IPR013083 -
Apr7g1029 756 PANTHER U BOX DOMAIN-CONTAINING 5 744 - -
Apr7g1029 756 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 5 744 - -
Apr7g1029 756 SUPERFAMILY RING/U-box 262 348 - -
Apr7g1029 756 CDD RING-Ubox_PUB 276 318 IPR045210 -
Apr7g1029 756 Pfam U-box domain 274 342 IPR003613 GO:0004842|GO:0016567
Apr7g1029 756 MobiDBLite consensus disorder prediction 712 756 - -
Apr7g1029 756 MobiDBLite consensus disorder prediction 395 411 - -
Apr7g1029 756 SUPERFAMILY ARM repeat 434 704 IPR016024 -
Apr7g1029 756 MobiDBLite consensus disorder prediction 395 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g1029 Apr-Chr7 17359084 17365263 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g1029 15 704 U-box Gene Family AT4G36550 38.088 9.06e-145 439
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g1029 - - gmx:100791627 1124.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g1029 7 17359084 17365263 Apr7g1029 7 17359084 17365263 ECH
Apr3g0289 3 5674787 5680550 Apr7g1029 7 17359084 17365263 ECH
Apr7g1029 7 17359084 17365263 Apr3g0289 3 5674787 5680550 PCT