Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g1026 ATGGAAATGAGAGGCCAAGATAAGGAAATAGATATACCAACCACTTTAGGTTACAACCTTCCCAACAGAGATTCTTCTTCCTCATCATCCAAACTCTCTTCTCCAACAGGTGAAAGAAGTAGTGATCAACCTCACACTTTAATCTACAACGACCAACCTCAATCTTCACACCCCCATCATCTTTATCCACCTCCTCCTCCTCTTGCACCCACTCAACTTGCTCAATCTCACAGACCCACATCAGATCCAGATCTAAGCACCCCTCTTGGTACCACATCGAATCCTCCAAGAACAGCAACACCACATACGACAACAACAACCTCTACCCCATCGATCAGGTACCGAGAATGTCTGAGGAACCACGCGGCAAGCATGGGAAGCCACGTGATGGACGGTTGTGGAGAGTTCATGGCAAGTGGAGAAGATGGCACCCAAGAATCACTAAGATGCGCCGCTTGTGACTGCCACCGCAACTTCCACCGAAAAGAGGTTGAAGGAGAACAATCACAACCACAACCACAACCACAACTTGTCCACAATTATCACAACTATTACCCCAACAAATACAACGGTCATCTTCACTACCCTACACCCTCTTCTTCTCTCCATCACCATCATAGATTTTCCCATGTGGTCGCCACTAACCCTACACCAAGTTTGGTTCCTCCAGTGATGATGGCCTTTGGAGGCCCAGCTGAGTCATCAAGTGAAGATCTCAACATATTTCAATCAAACGCTGGAGCACAGTTATCAGTGCAGGCACCACTGTCAAAGAAGCGGTTCAGAACTAAGTTCTCGCAGCAGCAGAAAGATAGGATGATGGAGTTTGCTGACAAGATTGGTTGGAAGATTCAGAAACAAAATGAGCAAGAGGTACAACAATTTTGTACTCAAGTGGGTGTCAAGAGACAGGTTTTCAAGGTTTGGATGCACAATAACAAGCAAACAATGAAGAAGCAGCAAATGTAA 969 0.4582 MEMRGQDKEIDIPTTLGYNLPNRDSSSSSSKLSSPTGERSSDQPHTLIYNDQPQSSHPHHLYPPPPPLAPTQLAQSHRPTSDPDLSTPLGTTSNPPRTATPHTTTTTSTPSIRYRECLRNHAASMGSHVMDGCGEFMASGEDGTQESLRCAACDCHRNFHRKEVEGEQSQPQPQPQLVHNYHNYYPNKYNGHLHYPTPSSSLHHHHRFSHVVATNPTPSLVPPVMMAFGGPAESSSEDLNIFQSNAGAQLSVQAPLSKKRFRTKFSQQQKDRMMEFADKIGWKIQKQNEQEVQQFCTQVGVKRQVFKVWMHNNKQTMKKQQM* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g1026 322 MobiDBLite consensus disorder prediction 73 113 - -
Apr7g1026 322 Pfam ZF-HD protein dimerisation region 112 164 IPR006456 -
Apr7g1026 322 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 258 315 IPR006455 -
Apr7g1026 322 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 7 56 320 - -
Apr7g1026 322 SUPERFAMILY Homeodomain-like 253 319 IPR009057 -
Apr7g1026 322 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 113 164 IPR006456 -
Apr7g1026 322 Gene3D - 243 319 - -
Apr7g1026 322 MobiDBLite consensus disorder prediction 18 57 - -
Apr7g1026 322 MobiDBLite consensus disorder prediction 1 113 - -
Apr7g1026 322 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 56 320 - -
Apr7g1026 322 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 114 163 IPR006456 -
Apr7g1026 322 MobiDBLite consensus disorder prediction 58 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g1026 Apr-Chr7 17324079 17327332 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g1026 66 322 ZF-HD Transcription Factor Family AT2G18350 44.727 2.88e-68 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Apr7g1026 ZF-HD_dimer 9.7e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g1026 - - vra:106776405 406.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g1026 7 17324079 17327332 Apr7g1026 7 17324079 17327332 ECH
Apr3g0286 3 5555767 5557253 Apr7g1026 7 17324079 17327332 ECH
Apr7g1026 7 17324079 17327332 Apr3g0286 3 5555767 5557253 PCT