Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g1023 ATGCATCGTTGTTGCAGTGGCTCCCAGGGGCACGTGATGGGACCCTGTACATGTGGTATGTTTCATAGCCAAACCAATTCCTTCTCCATGCTATTCTCCATGCCCAACCACAAACCACCCTACGACGATCATTCCAACATGTATGACTATTCCTTCTCACCCCCTTCCTCTTCCGTCGATTGCACCCTCTCCCTCGGAACCCCATCAACCCGTTTCACCCAAGATGAAGAAAAACGAACCCGCCACCTCCAACGTCGCTCCGTTTCTAACTTCTGCTGGGATTTACTTCAATCCCAATCCCAGCCCACCCCACCCATCAACACTGCCTCCACCAACGACCCTCTCCTCGCTCGTCGCTGCGCCAATTGCGACACTACTTCAACTCCACTCTGGAGAAACGGGCCTCGAGGTCCAAAGTCACTGTGCAATGCGTGTGGGATTCGATTCAAGAAAGAAGAGAGAAGAGCGAGTGCTGCCGCCGCCGCACCCACCGCGGCTTCTGGCGTTGTAATGGAGTCGGCGCAGATGTATAACAGTTCATGGTACGCGCACTCGCAGAGCCAGAAGATGCAGTGCTTCTCGCCGGCGATGGCGAACGAGTTCCGATTCGTGGACGACGGCGATCGAGACTCCGATAACGGCATTCCCTTTCTCTCTTGGAGACTGAACGTGACGGAAGGAATGGGCCTTGTTCACGACTTGACGTTGAAAAAATAG 717 0.5425 MHRCCSGSQGHVMGPCTCGMFHSQTNSFSMLFSMPNHKPPYDDHSNMYDYSFSPPSSSVDCTLSLGTPSTRFTQDEEKRTRHLQRRSVSNFCWDLLQSQSQPTPPINTASTNDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRASAAAAAPTAASGVVMESAQMYNSSWYAHSQSQKMQCFSPAMANEFRFVDDGDRDSDNGIPFLSWRLNVTEGMGLVHDLTLKK* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g1023 238 CDD ZnF_GATA 119 151 IPR000679 GO:0006355|GO:0043565
Apr7g1023 238 Pfam GATA zinc finger 120 154 IPR000679 GO:0006355|GO:0043565
Apr7g1023 238 SMART GATA_3 114 168 IPR000679 GO:0006355|GO:0043565
Apr7g1023 238 ProSitePatterns GATA-type zinc finger domain. 120 145 IPR000679 GO:0006355|GO:0043565
Apr7g1023 238 PANTHER GATA TRANSCRIPTION FACTOR 18 1 235 - -
Apr7g1023 238 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 117 156 - -
Apr7g1023 238 Gene3D - 116 189 IPR013088 GO:0006355|GO:0008270
Apr7g1023 238 PANTHER GATA TRANSCRIPTION FACTOR 18 1 235 IPR044272 GO:0003700|GO:0009908
Apr7g1023 238 ProSiteProfiles GATA-type zinc finger domain profile. 114 150 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g1023 Apr-Chr7 17298094 17298945 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g1023 17 235 C2C2-Gata Transcription Factor Family AT3G50870 41.608 3.73e-55 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Apr7g1023 GATA 5.7e-18 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g1023 - - gmx:100790571 366.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g1023 7 17298094 17298945 Apr7g1023 7 17298094 17298945 ECH