Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g1015 ATGGAGGCGAAAAACATGGTTAAGAACGACGATCCTGCAGCAGAGTCCCCAACTTCGGTCCTCGAAGATGAGGATGTCTGTGGCATTAAAGAAGAAGTTAAGTCAGAGGAAGAGGTGATTGCTGATGTTAAAGATGATGGGTCCTCTCTTATATCGAGAACAATGGCAGAGGAGGAAGAGAAGTTGCTCAAAGCTAGAATTAATGAAGAGAAGGCGCAGTGTGAGGAGGCAACTGACCTCAGTGACACACAGTTCAACAAATTGGATGAGCTTTTAACGCAAACCAAACTGTACTCTGAGTTTCTACTGGAGAAAATGGATGACATCACACTTACCATGGATGGACAAGAGAACATGGATGAAGAGAGCAAACCAGCAGCAAAGAAGCGGAGCCGTGGGTCTAAAAGAAAAGCAGCCTCACAGTGCAATACTAGGAAGGCCAAAAGGGCAGTTGCTGCAATGCTTACGAGATCTAAAGAAAGTGAGAGGACTGAAGATATGAACATGAGTGAGGAGGAAAGAATTGAGAAAGAGCAGAAAGAGCTCATGCCTTTACTGACAGGTGGAAAGTTGAAGCCTTATCAGCTGAAGGGTGTAAAGTGGTTGATTTCATTGTGGCAAAATGGGTTGAATGGGATTCTCGCTGATCAAATGGGTCTTGGAAAGACAATCCAAACAATTGGATTTCTCTCACATTTAAAAGGGAAAGGTCTGGATGGACCATACATGATAATTGCTCCTCTATCAACCCTATCAAATTGGGTGAATGAGATTTCTAGGTTTGCACCATCGCTCCATGCCATTATCTACCATGGTGACAAGAGACAGAGAGATGAGACTCGGAGGAAACACATGCCTAGAACAATTGGCGCGAATTTTCCCATTGTCATAACTTCTTATGAGGTTGCCTTAAATGATGCAAGGAAACATCTGAGGTTGTACAATTGGAAATATCTTGTTGTTGATGAGGGACACAGACTCAAAAACTCGAAATGCAAATTAGTGAAGACATTGAGATACATAAATGTAGAAAACAAGCTTCTTCTAACTGGGACACCTCTTCAGAATAACTTGGCAGAGCTATGGTCTCTGTTGAACTTCATTTTACCTGATATTTTCTCATCCCTTGAAGAATTTGAGTCATGGTTTAATCTGTCAGGAAAGTGTAGTAATGGATCAACTAAGGAAGAACTTGAAGAGAAACGAAGGACGCAAGTAGTAGCAAAACTTCATGCCATTCTTCGACCCTTTCTCCTACGAAGAATGAAGTCTGATGTTGAGATTATGTTGCCACGGAAAAAGGAGATTATTATCTATGCAAACATGACTGAGCATCAGAAGAATTTGCAGGATCATTTAGTTAATAAGACATTAGGGAACTATTTACCAGAAAAATTGTCAATTAGATGTGCTGCAAGTAAGCTTAATAATTTGGTTATTCAACTTAGAAAGGTCTGTAACCATCCAGATCTCTTGGATTCAGCCTTTGATGGTTCATATCTATATCCTCCTGTAAATGAGATAGTTGAACAATGTGGAAAATTCCATTTACTGGATCGATTGTTGCAACGTTTATTTGCAAGGAATCACAAAGTTCTGATCTTCAGTCAGTGGACTAAAGTGTTGGATATAATGGATTATTATTTTAGTGAAAAGGGCTTTGAGGTTTGCAGGATTGATGGTTGTGTGAAACTGGCTGAAAGAAAAAGACAGATTGAGGAATTCAACGATGTAAACAACGATTGCAGAATCTTTCTTCTTTCTACTAGGGCTGGTGGATTGGGAATTAACCTCACAGCAGCTGACACTTGCATTCTTTATGACAGTGATTGGAATCCTCAGATGGATTTACAGGCCATGGATAGATGTCATAGAATAGGCCAAACAAAGCCTGTTCATGTTTATAGGCTGTCAACAGCTCAATCTGTAGAGGGTCGCATGTTAAAAAGAGCATACAGCAAATTGAAACTTGAGCATGTGGTAATTGAAAAGGGACAATTTCATCAAGAACGTACAAAATCTGTTAGTATGAATGACCTGGAGGAAGAGGATGTTTTGGCATTGCTTCGAGATGAAGAAACAGCTGATGATAAAATGATACAAACAGATATAAGTGATGAAGATCTGGATAAGCTCTTGGATCGTAGTGATCTTGTTTTCGATGGACCAGCCAGTACTTTTCCCCTTAAAGGGCCTGGGTGGGAGGTGGTGATTCCAAGTGCAACGGGAGGCGTGCTTTCTACTCTGAGCAGCTAA 2256 0.4065 MEAKNMVKNDDPAAESPTSVLEDEDVCGIKEEVKSEEEVIADVKDDGSSLISRTMAEEEEKLLKARINEEKAQCEEATDLSDTQFNKLDELLTQTKLYSEFLLEKMDDITLTMDGQENMDEESKPAAKKRSRGSKRKAASQCNTRKAKRAVAAMLTRSKESERTEDMNMSEEERIEKEQKELMPLLTGGKLKPYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIGFLSHLKGKGLDGPYMIIAPLSTLSNWVNEISRFAPSLHAIIYHGDKRQRDETRRKHMPRTIGANFPIVITSYEVALNDARKHLRLYNWKYLVVDEGHRLKNSKCKLVKTLRYINVENKLLLTGTPLQNNLAELWSLLNFILPDIFSSLEEFESWFNLSGKCSNGSTKEELEEKRRTQVVAKLHAILRPFLLRRMKSDVEIMLPRKKEIIIYANMTEHQKNLQDHLVNKTLGNYLPEKLSIRCAASKLNNLVIQLRKVCNHPDLLDSAFDGSYLYPPVNEIVEQCGKFHLLDRLLQRLFARNHKVLIFSQWTKVLDIMDYYFSEKGFEVCRIDGCVKLAERKRQIEEFNDVNNDCRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLSTAQSVEGRMLKRAYSKLKLEHVVIEKGQFHQERTKSVSMNDLEEEDVLALLRDEETADDKMIQTDISDEDLDKLLDRSDLVFDGPASTFPLKGPGWEVVIPSATGGVLSTLSS* 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g1015 751 MobiDBLite consensus disorder prediction 129 143 - -
Apr7g1015 751 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 423 713 IPR027417 -
Apr7g1015 751 PANTHER BNAC07G16550D PROTEIN 9 750 - -
Apr7g1015 751 Gene3D - 427 720 IPR027417 -
Apr7g1015 751 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 162 421 IPR027417 -
Apr7g1015 751 Pfam SNF2-related domain 194 491 IPR000330 GO:0005524|GO:0140658
Apr7g1015 751 Gene3D - 155 420 IPR038718 -
Apr7g1015 751 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 517 673 IPR001650 -
Apr7g1015 751 MobiDBLite consensus disorder prediction 1 23 - -
Apr7g1015 751 Pfam Helicase conserved C-terminal domain 517 627 IPR001650 -
Apr7g1015 751 CDD SF2_C_SNF 503 637 - -
Apr7g1015 751 MobiDBLite consensus disorder prediction 114 145 - -
Apr7g1015 751 SMART ultradead3 187 382 IPR014001 -
Apr7g1015 751 PANTHER SNF2/RAD54 HELICASE FAMILY 9 750 - -
Apr7g1015 751 SMART helicmild6 543 627 IPR001650 -
Apr7g1015 751 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 203 371 IPR014001 -
Apr7g1015 751 Coils Coil 161 181 - -
Apr7g1015 751 Coils Coil 53 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g1015 Apr-Chr7 17165048 17171114 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g1015 177 648 RAD5 or RAD16-like Gene Family AT3G16600 24.090 8.67e-32 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Apr7g1015 SNF2_N 6.4e-67 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g1015 K19001 - gmx:100777687 1263.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g1015 7 17165048 17171114 Apr7g1015 7 17165048 17171114 ECH